Failed Reason

Failed to install dependency package :
------------------------------------------------
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/openjdk-11.0.20.1_1-tnugcuel3ph3a3rlqpfirhqh64m7irjl
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/pcre2-10.42-6kbyqamjjurixzzgishkv3abmew2p6xx
[+] /usr (external readline-7.0-e42rjj4i2akf22cltht7kf2fuxvhok62)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/which-2.21-whaiaoop4ssuqqj2liwkmwo4etlyyc52
[+] /usr (external xz-5.2.4-l5cq5xund4a2b3ikazvehpmbiao6srbv)
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk (external python-3.10.8-zcbuy6dnhwhmsrco46b6ayaywy4nrfcy)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-math-cdf-0.1-vj3264azi325li5p42ou4vlamvdkw4lv
==> Installing libsvm-323-qc5z2q3uoir2fjene5rc3q2c5yb7fl2v [16/25]
==> No binary for libsvm-323-qc5z2q3uoir2fjene5rc3q2c5yb7fl2v found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/7a/7a466f90f327a98f8ed1cb217570547bcb00077933d1619f3cb9e73518f38196.tar.gz
==> No patches needed for libsvm
==> libsvm: Executing phase: 'edit'
==> libsvm: Executing phase: 'build'
==> libsvm: Executing phase: 'install'
==> libsvm: Successfully installed libsvm-323-qc5z2q3uoir2fjene5rc3q2c5yb7fl2v
Stage: 4.31s. Edit: 0.00s. Build: 9.96s. Install: 0.21s. Post-install: 1.29s. Total: 16.58s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libsvm-323-qc5z2q3uoir2fjene5rc3q2c5yb7fl2v
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/bowtie-1.3.1-6bxx6yzkhw3xx47yuxcd7ntxtd333vxq
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gsl-2.7.1-6mx2lcmimqbuoeralzd5dqmp7f73t77k
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/r-4.3.0-e2kmfv2xhv67e5xxdvt4xlpswqw7q26t
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gzip-1.12-u55zm2bfq2mebh4chnmivqkqmbbdw2zi
==> Installing viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd [21/25]
==> No binary for viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/b8/b85544650ee316743173ec9b30497cc4c559f1bfb8f66d16c563f780afd8c0c5.tar.gz
==> No patches needed for viennarna
==> viennarna: Executing phase: 'autoreconf'
==> viennarna: Executing phase: 'configure'
==> viennarna: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

12 errors found in build log:
250 checking for directory to install architecture dependent python2 th
ings in... ${exec_prefix}/lib64/python2.7/site-packages
251 checking for Python2 module extension... .so
252 checking for /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-v
iennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd/spack-src/interface
s/Python/Makefile.am... yes
253 checking for /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-v
iennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd/spack-src/interface
s/Python/RNA_wrap.cpp... yes
254 checking for /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-v
iennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd/spack-src/interface
s/Python/RNA.py... yes
255 checking for python3... /vol0004/apps/oss/spack-v0.19/opt/spack/lin
ux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb
5sk/bin/python3
>> 256 checking for Python3 include path... <string>:1: DeprecationWarning
: The distutils package is deprecated and slated for removal in Pyt
hon 3.12. Use setuptools or check PEP 632 for potential alternative
s
>> 257 <string>:1: DeprecationWarning: The distutils.sysconfig module is d
eprecated, use sysconfig instead
258 /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/
python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/include/python3.10
259 checking for /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a6
4fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/include
/python3.10/Python.h... yes
260 checking for Python3 ldflags...
>> 261 checking for Python3 extension linker... <string>:1: DeprecationWar
ning: The distutils package is deprecated and slated for removal in
Python 3.12. Use setuptools or check PEP 632 for potential alterna
tives
>> 262 <string>:1: DeprecationWarning: The distutils.sysconfig module is d
eprecated, use sysconfig instead
263 /opt/FJSVxtclanga/tcsds-1.2.36/bin/fcc -shared -L/usr/lib64 -L/vol0
004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/expat
-2.4.8-lztkevt2hobbf7ykiwnuegynnoxqqvwe/lib -L/usr/lib64 -L/usr/lib
64 -L/usr/lib64 -L/usr/lib64 -L/usr/lib64 -L/usr/lib64 -L/vol0004/
apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/util-linu
x-uuid-2.38.1-c27ksl6k3mrl7o7bldrosk2bne5xplaw/lib -L/usr/lib64 -L/
vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/z
lib-1.2.13-go4ye2sg72pcca4bgunmcseuzq6czbol/lib
>> 264 checking for directory to install Python3 scripts in... <string>:1:
DeprecationWarning: The distutils package is deprecated and slated
for removal in Python 3.12. Use setuptools or check PEP 632 for po
tential alternatives
>> 265 <string>:1: DeprecationWarning: The distutils.sysconfig module is d
eprecated, use sysconfig instead
266 ${prefix}/lib/python3.10/site-packages
>> 267 checking for directory to install architecture dependent python3 th
ings in... <string>:1: DeprecationWarning: The distutils package is
deprecated and slated for removal in Python 3.12. Use setuptools o
r check PEP 632 for potential alternatives
>> 268 <string>:1: DeprecationWarning: The distutils.sysconfig module is d
eprecated, use sysconfig instead
269 ${exec_prefix}/lib/python3.10/site-packages
>> 270 checking for Python3 module extension... <string>:1: DeprecationWar
ning: The distutils package is deprecated and slated for removal in
Python 3.12. Use setuptools or check PEP 632 for potential alterna
tives
>> 271 <string>:1: DeprecationWarning: The distutils.sysconfig module is d
eprecated, use sysconfig instead
272 .cpython-310-aarch64-linux-gnu.so
273 checking for Python3 tag for cached compiled scripts... cpython-310
274 checking for Python3 extension of cached and optimized bytecode...
cpython-310.opt-1.pyc
275 checking for doxygen... no
276 checking for dot... /usr/bin/dot
277 checking for egrep... /usr/bin/egrep

...

726 checking for a BSD-compatible install... /usr/bin/install -c
727 checking whether build environment is sane... yes
728 checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
729 checking for gawk... gawk
730 checking whether make sets $(MAKE)... yes
731 checking whether make supports the include directive... yes (GNU st
yle)
>> 732 configure: error: source directory already configured; run "make di
stclean" there first
>> 733 make: *** [Makefile:609: config.status] Error 1

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd/spack-build-out.txt

==> Warning: Skipping build of cleaveland4-4.5-7xhbl3yxjz6r43lvrrfsz2ma7r66bdg4 since viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd failed
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libdeflate-1.18-zxcwhpic4vek7bmtkyaa5o245ygbnmhs
==> Installing htslib-1.17-ymxsjddoy6kztkc2a3giywig2pzso5lu [23/25]
==> No binary for htslib-1.17-ymxsjddoy6kztkc2a3giywig2pzso5lu found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/76/763779288c40f07646ec7ad98b96c378c739171d162ad98398868783b721839f.tar.bz2
==> No patches needed for htslib
==> htslib: Executing phase: 'autoreconf'
==> htslib: Executing phase: 'configure'
==> htslib: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

1 error found in build log:
85 ==> [2024-03-12-14:21:03.113447] Find (recursive): /data/rccs-sdt/a0
1008/tmpdir/spack-stage/spack-stage-htslib-1.17-ymxsjddoy6kztkc2a3gi
ywig2pzso5lu/spack-src ['libtool']
86 ==> [2024-03-12-14:21:03.341407] Find complete: /data/rccs-sdt/a0100
8/tmpdir/spack-stage/spack-stage-htslib-1.17-ymxsjddoy6kztkc2a3giywi
g2pzso5lu/spack-src ['libtool']
87 ==> htslib: Executing phase: 'build'
88 ==> [2024-03-12-14:21:03.396260] 'make' '-j16' 'V=1'
89 make: Makefile: Too many levels of symbolic links
90 make: stat: Makefile: Too many levels of symbolic links
>> 91 make: *** No rule to make target 'Makefile'. Stop.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-htslib-1.17-ymxsjddoy6kztkc2a3giywig2pzso5lu/spack-build-out.txt

==> Warning: Skipping build of samtools-1.17-hsvzk6m2veqybyemi3gi6tjumueg5vln since htslib-1.17-ymxsjddoy6kztkc2a3giywig2pzso5lu failed
==> Error: cleaveland4-4.5-7xhbl3yxjz6r43lvrrfsz2ma7r66bdg4: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).