delly2 2017-08-03
Compiler |
Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38 |
Result |
Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /usr (external bzip2-1.0.6-r4iabrte3nd5eemcd5v5coc3kvsnoyzu)
[+] /usr (external curl-7.61.1-qsvgylcys5hkzdnl2pdh4blrprxlsp5m)
[+] /usr (external xz-5.2.4-l5cq5xund4a2b3ikazvehpmbiao6srbv)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zstd-1.5.5-o7dcxyae4kjgruht44yuloa27ddisxfe
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
==> Installing boost-1.83.0-euw3cgwbvcoo46xvfgmou4sbpvyzffri [8/11]
==> No binary for boost-1.83.0-euw3cgwbvcoo46xvfgmou4sbpvyzffri found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/64/6478edfe2f3305127cffe8caf73ea0176c53769f4bf1585be237eb30798c3b8e.tar.bz2
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis-1.77.patch
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/boost/bootstrap-compiler.patch
==> Ran patch() for boost
==> boost: Executing phase: 'install'
==> boost: Successfully installed boost-1.83.0-euw3cgwbvcoo46xvfgmou4sbpvyzffri
Stage: 46m 50.20s. Install: 21m 28.16s. Post-install: 7m 23.96s. Total: 1h 15m 45.21s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-euw3cgwbvcoo46xvfgmou4sbpvyzffri
==> Installing htslib-1.4-46ncv56xvs2bg3ulm5tgcdrn7k5bhjls [9/11]
==> No binary for htslib-1.4-46ncv56xvs2bg3ulm5tgcdrn7k5bhjls found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/5c/5cfc8818ff45cd6e924c32fec2489cb28853af8867a7ee8e755c4187f5883350.tar.bz2
==> No patches needed for htslib
==> htslib: Executing phase: 'autoreconf'
==> htslib: Executing phase: 'configure'
==> htslib: Executing phase: 'build'
==> htslib: Executing phase: 'install'
==> htslib: Successfully installed htslib-1.4-46ncv56xvs2bg3ulm5tgcdrn7k5bhjls
Stage: 7.37s. Autoreconf: 0.07s. Configure: 29.68s. Build: 1m 32.77s. Install: 1.75s. Post-install: 1.51s. Total: 2m 14.45s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/htslib-1.4-46ncv56xvs2bg3ulm5tgcdrn7k5bhjls
==> Installing bcftools-1.4-o27xuyspkh2jrqjnleahs7x7hwynouiu [10/11]
==> No binary for bcftools-1.4-o27xuyspkh2jrqjnleahs7x7hwynouiu found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/8f/8fb1b0a47ed4e1f9d7c70129d7993aa650da1688fd931b10646d1c4707ae234d.tar.bz2
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/bcftools/makefile_14.patch
==> bcftools: Executing phase: 'autoreconf'
==> bcftools: Executing phase: 'configure'
==> bcftools: Executing phase: 'build'
==> bcftools: Executing phase: 'install'
==> bcftools: Successfully installed bcftools-1.4-o27xuyspkh2jrqjnleahs7x7hwynouiu
Stage: 28.00s. Autoreconf: 0.58s. Configure: 0.72s. Build: 32.74s. Install: 1.21s. Post-install: 1.55s. Total: 1m 6.17s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/bcftools-1.4-o27xuyspkh2jrqjnleahs7x7hwynouiu
==> Installing delly2-1.1.6-7cs5ewdcrfxga3jfh4mlefzddx5ugpku [11/11]
==> No binary for delly2-1.1.6-7cs5ewdcrfxga3jfh4mlefzddx5ugpku found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/08/08961e9c81431eb486476fa71eea94941ad24ec1970b71e5a7720623a39bfd2a.tar.gz
==> No patches needed for delly2
==> delly2: Executing phase: 'edit'
==> delly2: Executing phase: 'build'
==> delly2: Executing phase: 'install'
==> delly2: Successfully installed delly2-1.1.6-7cs5ewdcrfxga3jfh4mlefzddx5ugpku
Stage: 4.33s. Edit: 0.08s. Build: 4m 1.29s. Install: 0.08s. Post-install: 1.34s. Total: 4m 10.45s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/delly2-1.1.6-7cs5ewdcrfxga3jfh4mlefzddx5ugpku
<= Back to list