Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/jsoncpp-1.9.5-ozk56qsn6jca72weem4xlbfhi3okyo5v
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /usr (external perl-5.26.3-rkgbbov2pluaat3kknhtag5ui3vltkqk)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gsl-2.7.1-6mx2lcmimqbuoeralzd5dqmp7f73t77k
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/bamtools-2.5.2-vafa2ipfcilh3aq57c4ctprbhsy3l55c
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/sparsehash-2.0.4-56pnllynm6hpjzi4tnc3ro4ib6lnvvk4
==> Installing ea-utils-2021-10-20-iu2hgzi62jnca7e6e23nu4t3lvqhan4u [8/8]
==> No binary for ea-utils-2021-10-20-iu2hgzi62jnca7e6e23nu4t3lvqhan4u found: installing from source
==> No patches needed for ea-utils
==> ea-utils: Executing phase: 'edit'
==> ea-utils: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

7 errors found in build log:
71 g++ -O3 -I. fastq-mcf.cpp fastq-lib.cpp -o fastq-mcf
72 g++ -O3 -I. fastq-multx.cpp fastq-lib.cpp -o fastq-multx
73 g++ -O3 -I. fastq-join.cpp fastq-lib.cpp -o fastq-join
74 g++ -O3 -I. fastq-lib.cpp gcModel.cpp -o fastq-stats fastq-stats.c
pp
75 g++ -O3 -I. fastq-clipper.cpp fastq-lib.cpp -o fastq-clipper
76 cd samtools && make libbam.a
>> 77 fastq-mcf.cpp:29:10: fatal error: sparsehash/sparse_hash_map: No su
ch file or directory
78 #include <sparsehash/sparse_hash_map> // or sparse_hash_set, dense
_hash_map, ...
79 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 compilation terminated.
81 make[1]: warning: jobserver unavailable: using -j1. Add '+' to par
ent make rule.
82 g++ -O3 -I. fastq-lib.cpp tidx/tidx-lib.cpp -o varcall varcall.cpp
-lgsl -lgslcblas
83 make[1]: Entering directory '/vol0003/rccs-sdt/data/a01008/tmpdir/s
pack-stage/spack-stage-ea-utils-2021-10-20-iu2hgzi62jnca7e6e23nu4t3
lvqhan4u/spack-src/clipper/samtools'

...

87 int i, tmp, stop = 0;
88 ^~~
89 bgzf.c: In function 'bgzf_close':
90 bgzf.c:572:11: warning: variable 'count' set but not used [-Wunused
-but-set-variable]
91 int ret, count, block_length;
92 ^~~~~
>> 93 make: *** [Makefile:69: fastq-mcf] Error 1
94 make: *** Waiting for unfinished jobs....
95 gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -
D_USE_KNETFILE -D_CURSES_LIB=1 -I. kstring.c -o kstring.o
>> 96 tidx/tidx-lib.cpp:12:10: fatal error: sparsehash/dense_hash_map: No
such file or directory
97 #include <sparsehash/dense_hash_map>
98 ^~~~~~~~~~~~~~~~~~~~~~~~~~~
99 compilation terminated.
>> 100 varcall.cpp:33:10: fatal error: gsl/gsl_randist.h: No such file or
directory
101 #include <gsl/gsl_randist.h>
102 ^~~~~~~~~~~~~~~~~~~
103 compilation terminated.
>> 104 make: *** [Makefile:94: varcall] Error 1
105 gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -
D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_aux.c -o bam_aux.o
>> 106 fastq-stats.cpp:78:10: fatal error: sparsehash/sparse_hash_map: No
such file or directory
107 #include <sparsehash/sparse_hash_map> // or sparse_hash_set, dense
_hash_map, ...
108 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
109 compilation terminated.
>> 110 make: *** [Makefile:98: fastq-stats] Error 1
111 gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -
D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam.c -o bam.o
112 bam.c: In function 'bam_header_write':
113 bam.c:128:2: warning: 'strncpy' output truncated before terminating
nul copying 4 bytes from a string of the same length [-Wstringop-t
runcation]
114 strncpy(buf, "BAM\001", 4);
115 ^~~~~~~~~~~~~~~~~~~~~~~~~~
116 gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -
D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_import.c -o bam_import.o

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-ea-utils-2021-10-20-iu2hgzi62jnca7e6e23nu4t3lvqhan4u/spack-build-out.txt