List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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enzyme 0.0.81

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external curl-7.61.1-qsvgylcys5hkzdnl2pdh4blrprxlsp5m)
[+] /usr (external ncurses-6.1-a6lc7oq2dlgphtibbpp6x72mqgmscros)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /usr (external binutils-2.30-55sq7emkzs6yuxeljw7guokcs42fnwnf)
[+] /usr (external hwloc-2.2.0-uek4abd3fnx3x4ulqymndgwqr7ib3cu3)
[+] /usr (external libedit-3.1-ux4kuci6bussthhfjp5hadpzdjflft7e)
[+] /usr (external libffi-3.1-t3pvneonzixzuuslyi77hvdmtpiwcmnn)
[+] /usr (external libxml2-2.9.7-psbfksllqwmljlwwnb24enmihejo6ws6)
[+] /usr (external readline-7.0-e42rjj4i2akf22cltht7kf2fuxvhok62)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/ninja-1.11.1-hkoahomauz36ql3b7gyr3bbjctk3swkj
[+] /usr (external perl-5.26.3-rkgbbov2pluaat3kknhtag5ui3vltkqk)
[+] /usr (external pkgconf-1.4.2-mmjuloqcob6vnd6bylwgum67waaa3kht)
[+] /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk (external python-3.10.8-zcbuy6dnhwhmsrco46b6ayaywy4nrfcy)
[+] /usr (external xz-5.2.4-l5cq5xund4a2b3ikazvehpmbiao6srbv)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/unzip-6.0-ra7fuet2ctpm2wd33on4c7u6pcrrnyjb
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/pcre2-10.42-6kbyqamjjurixzzgishkv3abmew2p6xx
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-data-dumper-2.173-ygjrf2rvyjbkws2ks5e57ddpokq46qko
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/lua-5.3.6-pebser536i2vhijvr3x5jrz3j5gkszl3
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/swig-4.1.1-krn47misz4rokhqg4vsn7pyz55cu625z
==> Installing llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u [22/23]
==> No binary for llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/56/56b2f75fdaa95ad5e477a246d3f0d164964ab066b4619a01836ef08e475ec9d5.tar.gz
==> Ran patch() for llvm
==> llvm: Executing phase: 'cmake'
==> llvm: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 1:
'ninja' '-j16' '-v'

5 errors found in build log:
9873 ^
9874 <command line>:1:9: note: previous definition is here
9875 #define DEBUG_PREFIX "TARGET CUDA RTL"
9876 ^
9877 1 warning generated.
9878 [1716/2506] Linking CXX shared library /vol0003/rccs-sdt/data/a010
08/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2
c6f34cfvea2u/spack-build-sukibby/lib/libomptarget.rtl.aarch64.so.1
6
>> 9879 FAILED: /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-sta
ge-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibb
y/lib/libomptarget.rtl.aarch64.so.16
9880 : && /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-
llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/.
/bin/clang++ --target=aarch64-unknown-linux-gnu -fPIC -std=c++11 -
fPIC -fno-semantic-interposition -fvisibility-inlines-hidden -Werr
or=date-time -Werror=unguarded-availability-new -Wall -Wextra -Wno
-unused-parameter -Wwrite-strings -Wcast-qual -Wmissing-field-init
ializers -Wimplicit-fallthrough -Wcovered-switch-default -Wno-noex
cept-type -Wnon-virtual-dtor -Wdelete-non-virtual-dtor -Wsuggest-o
verride -Wno-comment -Wstring-conversion -Wmisleading-indentation
-Wctad-maybe-unsupported -fdiagnostics-color -ffunction-sections -
fdata-sections -Wall -Wcast-qual -Wformat-pedantic -Wimplicit-fall
through -Wsign-compare -Wno-enum-constexpr-conversion -Wno-extra -
Wno-pedantic -std=c++17 -O3 -DNDEBUG -Wl,-z,defs -Wl,-z,nodelete
-Wl,--gc-sections -shared -Wl,-soname,libomptarget.rtl.aarch64.s
o.16 -o /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-sta
ge-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibb
y/lib/libomptarget.rtl.aarch64.so.16 openmp/libomptarget/plugins/c
ommon/elf_common/CMakeFiles/elf_common.dir/elf_common.cpp.o openmp
/libomptarget/plugins/common/elf_common/CMakeFiles/elf_common.dir/
ELFSymbols.cpp.o openmp/libomptarget/plugins/aarch64/CMakeFiles/om
ptarget.rtl.aarch64.dir/vol0003/rccs-sdt/data/a01008/tmpdir/spack-
stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spa
ck-src/openmp/libomptarget/plugins/generic-elf-64bit/src/rtl.cpp.o
-Wl,-rpath,"\$ORIGIN:/vol0003/rccs-sdt/data/a01008/tmpdir/spack-
stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spa
ck-build-sukibby/runtimes/runtimes-bins/openmp/libomptarget/plugin
s/aarch64/..:/vol0003/rccs-sdt/data/a01008/spack-all-test/env-2024
0227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4n
sqgrityww4eqljits3svzi4wynus3/lib:" /usr/lib64/libffi.so -Wl,--v
ersion-script=/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spa
ck-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-src/op
enmp/libomptarget/plugins/aarch64/../exports /vol0003/rccs-sdt/da
ta/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb
6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLLVMObject.a /vol0
003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.
6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLLVM
IRReader.a /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack
-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-su
kibby/lib/libLLVMBitReader.a /vol0003/rccs-sdt/data/a01008/tmpdir
/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfve
a2u/spack-build-sukibby/lib/libLLVMAsmParser.a /vol0003/rccs-sdt/
data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcn
lb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLLVMCore.a /vol0
003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.
6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLLVM
Remarks.a /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-
stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-suk
ibby/lib/libLLVMBitstreamReader.a /vol0003/rccs-sdt/data/a01008/t
mpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f3
4cfvea2u/spack-build-sukibby/lib/libLLVMMCParser.a /vol0003/rccs-
sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibby
vhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLLVMMC.a /vo
l0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.
0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLL
VMDebugInfoCodeView.a /vol0003/rccs-sdt/data/a01008/tmpdir/spack-
stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spa
ck-build-sukibby/lib/libLLVMTextAPI.a /vol0003/rccs-sdt/data/a010
08/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2
c6f34cfvea2u/spack-build-sukibby/lib/libLLVMBinaryFormat.a /vol00
03/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.6
-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLLVMT
argetParser.a /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/sp
ack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build
-sukibby/lib/libLLVMSupport.a -lrt -ldl -lm /vol0003/rccs-sdt/
data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel
8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3/l
ib/libz.so /usr/lib64/libtinfo.so /vol0003/rccs-sdt/data/a01008/
tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f
34cfvea2u/spack-build-sukibby/lib/libLLVMDemangle.a && :
9881 /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-
16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/li
bLLVMSupport.a(Process.cpp.o): In function `llvm::sys::Process::Sa
felyCloseFileDescriptor(int)':
>> 9882 /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-
16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-src/llvm/lib/Support
/Unix/Process.inc:246: undefined reference to `pthread_sigmask'
>> 9883 /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-
16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-src/llvm/lib/Support
/Unix/Process.inc:261: undefined reference to `pthread_sigmask'
>> 9884 clang-16: error: linker command failed with exit code 1 (use -v to
see invocation)
9885 [1740/2506] Building CXX object openmp/libomptarget/plugins-nextge
n/common/PluginInterface/CMakeFiles/PluginInterface.dir/JIT.cpp.o
9886 ninja: build stopped: subcommand failed.
>> 9887 FAILED: runtimes/runtimes-stamps/runtimes-build /vol0003/rccs-sdt/
data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcn
lb6epwzx2c6f34cfvea2u/spack-build-sukibby/runtimes/runtimes-stamps
/runtimes-build
9888 cd /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-ll
vm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/run
times/runtimes-bins && /vol0003/rccs-sdt/data/a01008/spack-all-tes
t/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3
.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6/bin/cmake --build .
9889 ninja: build stopped: subcommand failed.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-out.txt

==> Warning: Skipping build of enzyme-0.0.81-f2vv5huwvm4hmqycvx3mahqzlxcs363j since llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u failed
==> Error: enzyme-0.0.81-f2vv5huwvm4hmqycvx3mahqzlxcs363j: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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