Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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Compiler | Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38 |
---|---|
Result | Dependency Error |
Failed to install dependency package :
------------------------------------------------
==> pacbio-dazz-db: Successfully installed pacbio-dazz-db-2017-04-10-nvv5cwd26fugszsnuyxalmqpo2hson25
Stage: 8.55s. Edit: 0.29s. Build: 13.75s. Install: 0.42s. Post-install: 0.92s. Total: 24.43s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/pacbio-dazz-db-2017-04-10-nvv5cwd26fugszsnuyxalmqpo2hson25
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-setuptools-68.0.0-umhokgnekqyzlgjhl6pifea67uvzwnge
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-wheel-0.41.2-uecnqi7ns7hm2wehm3fwrq4fyygklprs
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pip-23.1.2-e5mqkkojghz4zpl6zboxzql3mko55ccd
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/hdf5-1.14.3-qyemvkveh5ldexwnl2xrex2gtauttyvc
==> Installing pacbio-daligner-2017-08-05-mecfwoqbd7snhp3rg4fxy3nc44uprel7 [12/17]
==> No binary for pacbio-daligner-2017-08-05-mecfwoqbd7snhp3rg4fxy3nc44uprel7 found: installing from source
==> No patches needed for pacbio-daligner
==> pacbio-daligner: Executing phase: 'edit'
==> pacbio-daligner: Executing phase: 'build'
==> pacbio-daligner: Executing phase: 'install'
==> pacbio-daligner: Successfully installed pacbio-daligner-2017-08-05-mecfwoqbd7snhp3rg4fxy3nc44uprel7
Stage: 8.34s. Edit: 0.15s. Build: 26.49s. Install: 0.36s. Post-install: 0.91s. Total: 36.82s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/pacbio-daligner-2017-08-05-mecfwoqbd7snhp3rg4fxy3nc44uprel7
==> Installing py-decorator-5.1.1-dihrx2c2yzgvmaovnvmqo26lafutnvb7 [13/17]
==> No binary for py-decorator-5.1.1-dihrx2c2yzgvmaovnvmqo26lafutnvb7 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/63/637996211036b6385ef91435e4fae22989472f9d571faba8927ba8253acbc330.tar.gz
==> No patches needed for py-decorator
==> py-decorator: Executing phase: 'install'
==> py-decorator: Successfully installed py-decorator-5.1.1-dihrx2c2yzgvmaovnvmqo26lafutnvb7
Stage: 1.90s. Install: 26.18s. Post-install: 0.88s. Total: 29.68s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-decorator-5.1.1-dihrx2c2yzgvmaovnvmqo26lafutnvb7
==> Installing pacbio-dextractor-2016-08-09-ilewdsfx77s4yo62w6zbahbyrmhnahpf [14/17]
==> No binary for pacbio-dextractor-2016-08-09-ilewdsfx77s4yo62w6zbahbyrmhnahpf found: installing from source
==> No patches needed for pacbio-dextractor
==> pacbio-dextractor: Executing phase: 'edit'
==> pacbio-dextractor: Executing phase: 'build'
==> pacbio-dextractor: Executing phase: 'install'
==> pacbio-dextractor: Successfully installed pacbio-dextractor-2016-08-09-ilewdsfx77s4yo62w6zbahbyrmhnahpf
Stage: 7.01s. Edit: 0.28s. Build: 6.55s. Install: 0.10s. Post-install: 1.00s. Total: 17.11s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/pacbio-dextractor-2016-08-09-ilewdsfx77s4yo62w6zbahbyrmhnahpf
==> Installing py-networkx-1.10-cmqewu52en5ihmznhxc4lidrvazdba3p [15/17]
==> No binary for py-networkx-1.10-cmqewu52en5ihmznhxc4lidrvazdba3p found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/ce/ced4095ab83b7451cec1172183eff419ed32e21397ea4e1971d92a5808ed6fb8.tar.gz
==> No patches needed for py-networkx
==> py-networkx: Executing phase: 'install'
==> py-networkx: Successfully installed py-networkx-1.10-cmqewu52en5ihmznhxc4lidrvazdba3p
Stage: 15.82s. Install: 1m 10.60s. Post-install: 14.91s. Total: 1m 42.09s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-networkx-1.10-cmqewu52en5ihmznhxc4lidrvazdba3p
==> Installing py-pypeflow-2017-05-04-mzebz7j22be56cqdgealu2lhikkr6ifb [16/17]
==> No binary for py-pypeflow-2017-05-04-mzebz7j22be56cqdgealu2lhikkr6ifb found: installing from source
==> No patches needed for py-pypeflow
==> py-pypeflow: Executing phase: 'install'
==> py-pypeflow: Successfully installed py-pypeflow-2017-05-04-mzebz7j22be56cqdgealu2lhikkr6ifb
Stage: 11.42s. Install: 13.40s. Post-install: 1.57s. Total: 27.23s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pypeflow-2017-05-04-mzebz7j22be56cqdgealu2lhikkr6ifb
==> Installing falcon-2017-05-30-sxl2tpe42qbqkxfwxb4hbijvfpmuwdkf [17/17]
==> No binary for falcon-2017-05-30-sxl2tpe42qbqkxfwxb4hbijvfpmuwdkf found: installing from source
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/falcon/Py_None.patch
==> falcon: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'/vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/bin/python3.10' '-m' 'pip' '-vvv' '--no-input' '--no-cache-dir' '--disable-pip-version-check' 'install' '--no-deps' '--ignore-installed' '--no-build-isolation' '--no-warn-script-location' '--no-index' '--prefix=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/falcon-2017-05-30-sxl2tpe42qbqkxfwxb4hbijvfpmuwdkf' '.'
4 errors found in build log:
12 Processing /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-s
tage-falcon-2017-05-30-sxl2tpe42qbqkxfwxb4hbijvfpmuwdkf/spack-src
13 Added file:///vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spa
ck-stage-falcon-2017-05-30-sxl2tpe42qbqkxfwxb4hbijvfpmuwdkf/spack-s
rc to build tracker '/vol0003/rccs-sdt/data/a01008/tmpdir/pip-build
-tracker-s5is0ef_'
14 Running setup.py (path:/vol0003/rccs-sdt/data/a01008/tmpdir/spack
-stage/spack-stage-falcon-2017-05-30-sxl2tpe42qbqkxfwxb4hbijvfpmuwd
kf/spack-src/setup.py) egg_info for package from file:///vol0003/rc
cs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-falcon-2017-05-30
-sxl2tpe42qbqkxfwxb4hbijvfpmuwdkf/spack-src
15 Created temporary directory: /vol0003/rccs-sdt/data/a01008/tmpdir
/pip-pip-egg-info-alt602jo
16 Preparing metadata (setup.py): started
17 Running command python setup.py egg_info
>> 18 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt
/spack/linux-rhel8-a64fx/fj-4.10.0/py-setuptools-68.0.0-umhokgnekqy
zlgjhl6pifea67uvzwnge/lib/python3.10/site-packages/setuptools/__ini
t__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_bui
ld_eggs are deprecated.
19 !!
20
21 *********************************************************
***********************
22 Requirements should be satisfied by a PEP 517 installer.
23 If you are using pip, you can try `pip install --use-pep5
17`.
24 *********************************************************
***********************
25
26 !!
27 dist.fetch_build_eggs(dist.setup_requires)
>> 28 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt
/spack/linux-rhel8-a64fx/fj-4.10.0/py-setuptools-68.0.0-umhokgnekqy
zlgjhl6pifea67uvzwnge/lib/python3.10/site-packages/setuptools/dist.
py:510: SetuptoolsDeprecationWarning: Invalid version: "0.7+git.b'8
6cec6157291679095ea6080b0cde6561eccc041\\n'".
29 !!
30
31 *********************************************************
***********************
32 The version specified is not a valid version according to
PEP 440.
33 This may not work as expected with newer versions of
34 setuptools, pip, and PyPI.
...
39 See https://peps.python.org/pep-0440/ for details.
40 *********************************************************
***********************
41
42 !!
43 self._validate_version(self.metadata.version)
44 running egg_info
>> 45 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt
/spack/linux-rhel8-a64fx/fj-4.10.0/py-setuptools-68.0.0-umhokgnekqy
zlgjhl6pifea67uvzwnge/lib/python3.10/site-packages/setuptools/comma
nd/egg_info.py:131: SetuptoolsDeprecationWarning: Invalid version:
"0.7+git.b'86cec6157291679095ea6080b0cde6561eccc041\\n'".
46 !!
47
48 *********************************************************
***********************
49 Version "0.7+git.b'86cec6157291679095ea6080b0cde6561eccc0
41\\n'" is not valid according to PEP 440.
50
51 Please make sure to specify a valid version for your pack
age.
...
126 setup_py_code = "from setuptools import setup; setup()"
127
128 exec(compile(setup_py_code, filename, "exec"))
129 '"'"''"'"''"'"' % ('"'"'/vol0003/rccs-sdt/data/a01008/tmpdir/spac
k-stage/spack-stage-falcon-2017-05-30-sxl2tpe42qbqkxfwxb4hbijvfpmuw
dkf/spack-src/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))'
egg_info --egg-base /vol0003/rccs-sdt/data/a01008/tmpdir/pip-pip-e
gg-info-alt602jo
130 cwd: /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage
-falcon-2017-05-30-sxl2tpe42qbqkxfwxb4hbijvfpmuwdkf/spack-src/
131 Preparing metadata (setup.py): finished with status 'error'
>> 132 error: metadata-generation-failed
133
134 × Encountered error while generating package metadata.
135 ╰─> See above for output.
136
137 note: This is an issue with the package mentioned above, not pip.
138 hint: See above for details.
See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-falcon-2017-05-30-sxl2tpe42qbqkxfwxb4hbijvfpmuwdkf/spack-build-out.txt