List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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fermikit 2017-11-7

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/sse2neon-1.6.0-sswzp4wgiy5ojaqld57p5naut3e7so4y
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
==> Installing fermikit-2017-11-7-6lzjtplkyntru5acjwa76ndkchgrokot [4/4]
==> No binary for fermikit-2017-11-7-6lzjtplkyntru5acjwa76ndkchgrokot found: installing from source
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/fermikit/ksw_for_aarch64.patch
==> fermikit: Executing phase: 'edit'
==> fermikit: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

3 errors found in build log:
34 gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC
_WRAPPERS malloc_wrap.c -o malloc_wrap.o
35 gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC
_WRAPPERS QSufSort.c -o QSufSort.o
36 gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC
_WRAPPERS bwt_gen.c -o bwt_gen.o
37 gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC
_WRAPPERS rope.c -o rope.o
38 gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC
_WRAPPERS rle.c -o rle.o
39 gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC
_WRAPPERS is.c -o is.o
>> 40 ksw.c:29:10: fatal error: sse2neon.h: No such file or directory
41 #include <sse2neon.h>
42 ^~~~~~~~~~~~
43 compilation terminated.
>> 44 make[1]: *** [Makefile:25: ksw.o] Error 1
45 make[1]: *** Waiting for unfinished jobs....
46 bwt_gen.c: In function 'BWTIncBuildRelativeRank':
47 bwt_gen.c:878:10: warning: variable 'oldInverseSa0RelativeRank' set
but not used [-Wunused-but-set-variable]
48 bgint_t oldInverseSa0RelativeRank = 0;
49 ^~~~~~~~~~~~~~~~~~~~~~~~~
50 bwt_gen.c: In function 'BWTIncMergeBwt':
51 bwt_gen.c:952:15: warning: variable 'bitsInWordMinusBitPerChar' set
but not used [-Wunused-but-set-variable]
52 unsigned int bitsInWordMinusBitPerChar;
53 ^~~~~~~~~~~~~~~~~~~~~~~~~
54 make[1]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/spa
ck-stage/spack-stage-fermikit-2017-11-7-6lzjtplkyntru5acjwa76ndkchgr
okot/spack-src/bwa'
>> 55 make: *** [Makefile:11: all-recur] Error 1

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-fermikit-2017-11-7-6lzjtplkyntru5acjwa76ndkchgrokot/spack-build-out.txt


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