Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/bc-1.07.1-cddj72nn4fk6g32cfsiqz3b7a4ncoile
[+] /usr (external curl-7.61.1-qsvgylcys5hkzdnl2pdh4blrprxlsp5m)
[+] /usr (external ncurses-6.1-a6lc7oq2dlgphtibbpp6x72mqgmscros)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /usr (external bzip2-1.0.6-r4iabrte3nd5eemcd5v5coc3kvsnoyzu)
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /usr (external xz-5.2.4-l5cq5xund4a2b3ikazvehpmbiao6srbv)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/ninja-1.11.1-hkoahomauz36ql3b7gyr3bbjctk3swkj
[+] /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk (external python-3.10.8-zcbuy6dnhwhmsrco46b6ayaywy4nrfcy)
[+] /usr (external perl-5.26.3-rkgbbov2pluaat3kknhtag5ui3vltkqk)
[+] /usr (external pkgconf-1.4.2-mmjuloqcob6vnd6bylwgum67waaa3kht)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gzip-1.12-u55zm2bfq2mebh4chnmivqkqmbbdw2zi
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-setuptools-68.0.0-umhokgnekqyzlgjhl6pifea67uvzwnge
==> Installing parallel-20220522-i4i5ljbrgs7gxcr3ofvyrjkttynvlemt [16/22]
==> No binary for parallel-20220522-i4i5ljbrgs7gxcr3ofvyrjkttynvlemt found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/bb/bb6395f8d964e68f3bdb26a764d3c48b69bc5b759a92ac3ab2bd1895c7fa8c1f.tar.bz2
==> No patches needed for parallel
==> parallel: Executing phase: 'autoreconf'
==> parallel: Executing phase: 'configure'
==> parallel: Executing phase: 'build'
==> parallel: Executing phase: 'install'
==> parallel: Successfully installed parallel-20220522-i4i5ljbrgs7gxcr3ofvyrjkttynvlemt
Stage: 6.32s. Autoreconf: 0.05s. Configure: 7.33s. Build: 0.25s. Install: 6.18s. Post-install: 3.67s. Total: 24.89s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/parallel-20220522-i4i5ljbrgs7gxcr3ofvyrjkttynvlemt
==> Installing vcftools-0.1.16-2qwk2jusisu2qbr55mhjj556hz3tnw3o [17/22]
==> No binary for vcftools-0.1.16-2qwk2jusisu2qbr55mhjj556hz3tnw3o found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/db/dbfc774383c106b85043daa2c42568816aa6a7b4e6abc965eeea6c47dde914e3.tar.gz
==> No patches needed for vcftools
==> vcftools: Executing phase: 'autoreconf'
==> vcftools: Executing phase: 'configure'
==> vcftools: Executing phase: 'build'
==> vcftools: Executing phase: 'install'
==> vcftools: Successfully installed vcftools-0.1.16-2qwk2jusisu2qbr55mhjj556hz3tnw3o
Stage: 10.57s. Autoreconf: 0.10s. Configure: 1m 23.76s. Build: 1m 29.67s. Install: 4.98s. Post-install: 1.63s. Total: 3m 12.13s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/vcftools-0.1.16-2qwk2jusisu2qbr55mhjj556hz3tnw3o
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libdeflate-1.18-wdq7uvwnauvzqysy24aknbmredmsjh5r
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/meson-1.2.2-twpubak4adlis5o22xnr6hnwwalqpco3
==> Installing htslib-1.17-y6gwptav3s7cgh3q5ui7f65xzrljj2sy [20/22]
==> No binary for htslib-1.17-y6gwptav3s7cgh3q5ui7f65xzrljj2sy found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/76/763779288c40f07646ec7ad98b96c378c739171d162ad98398868783b721839f.tar.bz2
==> No patches needed for htslib
==> htslib: Executing phase: 'autoreconf'
==> htslib: Executing phase: 'configure'
==> htslib: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

1 error found in build log:
85 ==> [2024-03-17-11:29:53.101851] Find (recursive): /data/rccs-sdt/a0
1008/tmpdir/spack-stage/spack-stage-htslib-1.17-y6gwptav3s7cgh3q5ui7
f65xzrljj2sy/spack-src ['libtool']
86 ==> [2024-03-17-11:29:53.181818] Find complete: /data/rccs-sdt/a0100
8/tmpdir/spack-stage/spack-stage-htslib-1.17-y6gwptav3s7cgh3q5ui7f65
xzrljj2sy/spack-src ['libtool']
87 ==> htslib: Executing phase: 'build'
88 ==> [2024-03-17-11:29:53.228225] 'make' '-j16' 'V=1'
89 make: Makefile: Too many levels of symbolic links
90 make: stat: Makefile: Too many levels of symbolic links
>> 91 make: *** No rule to make target 'Makefile'. Stop.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-htslib-1.17-y6gwptav3s7cgh3q5ui7f65xzrljj2sy/spack-build-out.txt

==> Warning: Skipping build of samtools-1.17-uzk2elkrkv44iuaypyqzwm66xp6nbtts since htslib-1.17-y6gwptav3s7cgh3q5ui7f65xzrljj2sy failed
==> Warning: Skipping build of freebayes-1.3.6-d6kyxg3bmkylht3jbxr3si5bhtfyaci7 since samtools-1.17-uzk2elkrkv44iuaypyqzwm66xp6nbtts failed
==> Error: freebayes-1.3.6-d6kyxg3bmkylht3jbxr3si5bhtfyaci7: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).