List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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gbl V02-04-01

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
bb.dir/task.cpp.o CMakeFiles/tbb.dir/task_dispatcher.cpp.o CMakeFil
es/tbb.dir/task_group_context.cpp.o CMakeFiles/tbb.dir/version.cpp.
o CMakeFiles/tbb.dir/queuing_rw_mutex.cpp.o -Wl,-rpath,:::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::
272 [ 16%] Linking C executable ../fujitsuclang_7.1_cxx11_64_release/te
st_malloc_pure_c
273 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-intel-tbb-2021.9.0-er5to27rat2j4dv4dizloxefxf
kuusww/spack-build-er5to27'
274 cd /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-int
el-tbb-2021.9.0-er5to27rat2j4dv4dizloxefxfkuusww/spack-build-er5to2
7/test && /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227
/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkq
bxi5dcv7kbp6bugdcjc5ph6/bin/cmake -E cmake_link_script CMakeFiles/t
est_malloc_pure_c.dir/link.txt --verbose=1
>> 275 make[1]: *** [CMakeFiles/Makefile2:522: src/tbbmalloc_proxy/CMakeFi
les/tbbmalloc_proxy.dir/all] Error 2
276 make[1]: *** Waiting for unfinished jobs....
277 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/lib
/spack/env/fj/fcc -O3 -DNDEBUG CMakeFiles/test_malloc_pure_c.dir/tb
bmalloc/test_malloc_pure_c.c.o -o ../fujitsuclang_7.1_cxx11_64_rele
ase/test_malloc_pure_c -Wl,-rpath,/vol0003/rccs-sdt/data/a01008/tm
pdir/spack-stage/spack-stage-intel-tbb-2021.9.0-er5to27rat2j4dv4diz
loxefxfkuusww/spack-build-er5to27/fujitsuclang_7.1_cxx11_64_release
../fujitsuclang_7.1_cxx11_64_release/libtbbmalloc.so.2.9
>> 278 ../fujitsuclang_7.1_cxx11_64_release/libtbbmalloc.so.2.9: undefined
reference to `__gxx_personality_v0'
>> 279 ../fujitsuclang_7.1_cxx11_64_release/libtbbmalloc.so.2.9: undefined
reference to `__cxa_begin_catch'
>> 280 ../fujitsuclang_7.1_cxx11_64_release/libtbbmalloc.so.2.9: undefined
reference to `std::terminate()'
>> 281 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 282 make[2]: *** [test/CMakeFiles/test_malloc_pure_c.dir/build.make:101
: fujitsuclang_7.1_cxx11_64_release/test_malloc_pure_c] Error 1
283 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-intel-tbb-2021.9.0-er5to27rat2j4dv4dizloxefxf
kuusww/spack-build-er5to27'
>> 284 make[1]: *** [CMakeFiles/Makefile2:4062: test/CMakeFiles/test_mallo
c_pure_c.dir/all] Error 2
285 [ 16%] Linking CXX shared library ../fujitsuclang_7.1_cxx11_64_rele
ase/lib_test_malloc_used_by_lib.so
286 cd /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-int
el-tbb-2021.9.0-er5to27rat2j4dv4dizloxefxfkuusww/spack-build-er5to2
7/test && /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227
/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkq
bxi5dcv7kbp6bugdcjc5ph6/bin/cmake -E cmake_link_script CMakeFiles/_
test_malloc_used_by_lib.dir/link.txt --verbose=1
287 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/lib
/spack/env/fj/case-insensitive/FCC -fPIC -O3 -DNDEBUG -shared -Wl,-
soname,lib_test_malloc_used_by_lib.so -o ../fujitsuclang_7.1_cxx11_
64_release/lib_test_malloc_used_by_lib.so CMakeFiles/_test_malloc_u
sed_by_lib.dir/tbbmalloc/test_malloc_used_by_lib.cpp.o -Wl,-rpath,
/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-intel-
tbb-2021.9.0-er5to27rat2j4dv4dizloxefxfkuusww/spack-build-er5to27/f
ujitsuclang_7.1_cxx11_64_release ../fujitsuclang_7.1_cxx11_64_relea
se/libtbbmalloc.so.2.9
288 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-intel-tbb-2021.9.0-er5to27rat2j4dv4dizloxefxf
kuusww/spack-build-er5to27'
289 [ 16%] Built target _test_malloc_used_by_lib
290 [ 16%] Linking CXX executable ../fujitsuclang_7.1_cxx11_64_release/
test_malloc_lib_unload

...

325 [ 20%] Linking CXX executable ../fujitsuclang_7.1_cxx11_64_release/
test_scalable_allocator
326 cd /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-int
el-tbb-2021.9.0-er5to27rat2j4dv4dizloxefxfkuusww/spack-build-er5to2
7/test && /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227
/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkq
bxi5dcv7kbp6bugdcjc5ph6/bin/cmake -E cmake_link_script CMakeFiles/t
est_scalable_allocator.dir/link.txt --verbose=1
327 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/lib
/spack/env/fj/case-insensitive/FCC -O3 -DNDEBUG CMakeFiles/test_sca
lable_allocator.dir/tbbmalloc/test_scalable_allocator.cpp.o -o ../f
ujitsuclang_7.1_cxx11_64_release/test_scalable_allocator -Wl,-rpat
h,/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-inte
l-tbb-2021.9.0-er5to27rat2j4dv4dizloxefxfkuusww/spack-build-er5to27
/fujitsuclang_7.1_cxx11_64_release ../fujitsuclang_7.1_cxx11_64_rel
ease/libtbbmalloc.so.2.9
328 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-intel-tbb-2021.9.0-er5to27rat2j4dv4dizloxefxf
kuusww/spack-build-er5to27'
329 [ 20%] Built target test_scalable_allocator
330 make[1]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-intel-tbb-2021.9.0-er5to27rat2j4dv4dizloxefxf
kuusww/spack-build-er5to27'
>> 331 make: *** [Makefile:169: all] Error 2

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-intel-tbb-2021.9.0-er5to27rat2j4dv4dizloxefxfkuusww/spack-build-out.txt

==> Warning: Skipping build of root-6.24.06-7y2iprteulhidlm5wnbezfbxa6gvjude since intel-tbb-2021.9.0-er5to27rat2j4dv4dizloxefxfkuusww failed
==> Warning: Skipping build of gbl-V02-04-01-ec5wbnfcvjuh3ffd34z72hzll6qteuox since root-6.24.06-7y2iprteulhidlm5wnbezfbxa6gvjude failed
==> Installing gl2ps-1.4.2-4k5xcurzqkglpepnbekcdvckew44uj4c [38/51]
==> No binary for gl2ps-1.4.2-4k5xcurzqkglpepnbekcdvckew44uj4c found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/8d/8d1c00c1018f96b4b97655482e57dcb0ce42ae2f1d349cd6d4191e7848d9ffe9.tgz
==> No patches needed for gl2ps
==> gl2ps: Executing phase: 'cmake'
==> Error: IndexError: list index out of range

/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/gl2ps/package.py:40, in cmake_args:
37 self.define_from_variant("ENABLE_ZLIB", "zlib"),
38 self.define("OpenGL_GL_PREFERENCE", "LEGACY"),
39 self.define("OPENGL_INCLUDE_DIR", spec["gl"].headers.directories[0]),
>> 40 self.define("OPENGL_gl_LIBRARY", spec["gl"].libs[0]),
41 self.define("OPENGL_opengl_LIBRARY", "IGNORE"),
42 self.define("OPENGL_glx_LIBRARY", "IGNORE"),
43 self.define("OPENGL_egl_LIBRARY", "IGNORE"),

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gl2ps-1.4.2-4k5xcurzqkglpepnbekcdvckew44uj4c/spack-build-out.txt

==> Warning: mesa-glu-9.0.2-ak6wodkone3mqg2v3onyzu3wh6g46536 failed to install
==> Warning: Skipping build of ftgl-2.4.0-3hylparuq5i2z2ty4topgvymlfhbytop since mesa-glu-9.0.2-ak6wodkone3mqg2v3onyzu3wh6g46536 failed
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/unuran-1.8.1-bqnij4ayn7k5i5qvlnxgkpkfnuxx2ctw
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libx11-1.8.4-uwfs4whz7y6cxrmbfriae5rjsrkltevg
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libice-1.0.9-5amk2q7yuvsmnzenzss3zgpx4oisq75a
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libxrender-0.9.10-q4gwr6md66izqxyvqzgmk5y5mzuyfgmk
==> Installing glew-2.2.0-5bakhvnspvmbtntqw6xkfepcoq6lga7j [44/51]
==> No binary for glew-2.2.0-5bakhvnspvmbtntqw6xkfepcoq6lga7j found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/d4/d4fc82893cfb00109578d0a1a2337fb8ca335b3ceccf97b97e5cc7f08e4353e1.tgz
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/glew/remove-pkgconfig-glu-dep.patch
==> glew: Executing phase: 'cmake'
==> Error: IndexError: list index out of range

/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/glew/package.py:52, in cmake_args:
49 self.define("GLEW_EGL", False),
50 self.define("OpenGL_GL_PREFERENCE", "LEGACY"),
51 self.define("OPENGL_INCLUDE_DIR", spec["gl"].headers.directories[0]),
>> 52 self.define("OPENGL_gl_LIBRARY", spec["gl"].libs[0]),
53 self.define("OPENGL_opengl_LIBRARY", "IGNORE"),
54 self.define("OPENGL_glx_LIBRARY", "IGNORE"),
55 self.define("OPENGL_egl_LIBRARY", "IGNORE"),

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-glew-2.2.0-5bakhvnspvmbtntqw6xkfepcoq6lga7j/spack-build-out.txt

==> Error: gbl-V02-04-01-ec5wbnfcvjuh3ffd34z72hzll6qteuox: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libxpm-3.5.12-vc4ena325wn2zvugm26gbumskbwvyq2e
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libxext-1.3.3-uw36ft66btmhuje5wqpuvumdkjaliblr
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libsm-1.2.3-ql5dcoukjfwm4fv7fp4cuvvrcgfhmwo5
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libxft-2.3.2-iahsdrlqazowdzjdhfutghm6qt7wucg2


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