List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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gromacs 2023.3

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external curl-7.61.1-qsvgylcys5hkzdnl2pdh4blrprxlsp5m)
[+] /usr (external ncurses-6.1-a6lc7oq2dlgphtibbpp6x72mqgmscros)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /opt/FJSVxtclanga/tcsds-mpi-latest (external fujitsu-mpi-head-3njd5uwuazr4j2no6fqh4cpjmezknh3z)
[+] /usr (external gettext-0.19.8.1-6jl23wn6jpwquhvqibpwhvia7vxsgrq3)
[+] /usr (external perl-5.26.3-rkgbbov2pluaat3kknhtag5ui3vltkqk)
[+] /opt/FJSVxtclanga/tcsds-ssl2-latest (external fujitsu-ssl2-head-7eif42hdxt2tixz7cufiyhj62kz3jntb)
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /usr (external hwloc-2.2.0-uek4abd3fnx3x4ulqymndgwqr7ib3cu3)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/texinfo-7.0.3-vkcp6hi7jyqa2rhdb2chqfqjpdmdk63b
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/fujitsu-fftw-1.1.0-hahm47ll7fh4v6riv7jhw54ru7w2oh2g
==> Installing gromacs-2023.3-5o2h4oy2am56rihtsx6rjl4vh2xqwr6r [13/13]
==> No binary for gromacs-2023.3-5o2h4oy2am56rihtsx6rjl4vh2xqwr6r found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/4e/4ec8f8d0c7af76b13f8fd16db8e2c120e749de439ae9554d9f653f812d78d1cb.tar.gz
==> Ran patch() for gromacs
==> gromacs: Executing phase: 'cmake'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6/bin/cmake' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:STRING=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gromacs-2023.3-5o2h4oy2am56rihtsx6rjl4vh2xqwr6r' '-DCMAKE_BUILD_TYPE:STRING=Release' '-DCMAKE_INTERPROCEDURAL_OPTIMIZATION:BOOL=OFF' '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON' '-DCMAKE_INSTALL_RPATH:STRING=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gromacs-2023.3-5o2h4oy2am56rihtsx6rjl4vh2xqwr6r/lib;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gromacs-2023.3-5o2h4oy2am56rihtsx6rjl4vh2xqwr6r/lib64;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/fujitsu-fftw-1.1.0-hahm47ll7fh4v6riv7jhw54ru7w2oh2g/lib;/opt/FJSVxtclanga/tcsds-mpi-latest/lib64;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64' '-DCMAKE_PREFIX_PATH:STRING=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/fujitsu-fftw-1.1.0-hahm47ll7fh4v6riv7jhw54ru7w2oh2g;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/texinfo-7.0.3-vkcp6hi7jyqa2rhdb2chqfqjpdmdk63b;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6;/opt/FJSVxtclanga/tcsds-ssl2-latest;/opt/FJSVxtclanga/tcsds-mpi-latest' '-DGMX_MPI:BOOL=ON' '-DCMAKE_C_COMPILER=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/lib/spack/env/fj/fcc' '-DCMAKE_CXX_COMPILER=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/lib/spack/env/fj/case-insensitive/FCC' '-DMPI_C_COMPILER=/opt/FJSVxtclanga/tcsds-mpi-latest/bin/mpifcc' '-DMPI_CXX_COMPILER=/opt/FJSVxtclanga/tcsds-mpi-latest/bin/mpiFCC' '-DGMX_INSTALL_LEGACY_API=ON' '-DGMX_HWLOC:BOOL=ON' '-DGMX_GPU:STRING=OFF' '-DGMX_EXTERNAL_LAPACK:BOOL=ON' '-DGMX_LAPACK_USER=/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfjlapackexsve.so;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfjomphk.so;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfjomp.so;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libssl2mtexsve.a;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libssl2mtsve.a;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfj90i.so;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfj90fmt_sve.a;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfj90f.so;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfjsrcinfo.so;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfj90rt.so' '-DGMX_EXTERNAL_BLAS:BOOL=ON' '-DGMX_BLAS_USER=/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfjlapackexsve.so;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfjomphk.so;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfjomp.so;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libssl2mtexsve.a;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libssl2mtsve.a;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfj90i.so;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfj90fmt_sve.a;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfj90f.so;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfjsrcinfo.so;/opt/FJSVxtclanga/tcsds-ssl2-latest/lib64/libfj90rt.so' '-DGMX_SIMD=ARM_SVE' '-DGMX_USE_RDTSCP:BOOL=OFF' '-DGMX_OPENMP:BOOL=ON' '-DGMX_CYCLE_SUBCOUNTERS:BOOL=OFF' '-DGMX_FFT_LIBRARY=fftw3' '-DGMX_VERSION_STRING_OF_FORK=spack' '/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gromacs-2023.3-5o2h4oy2am56rihtsx6rjl4vh2xqwr6r/spack-src'

1 error found in build log:
33
34
35 -- Performing Test CXX_COMPILER_ACCEPTS_GCC_TOOLCHAIN_FLAG
36 -- Performing Test CXX_COMPILER_ACCEPTS_GCC_TOOLCHAIN_FLAG - Success
37 -- Performing Test CXX17_COMPILES_WITH_HELP
38 -- Performing Test CXX17_COMPILES_WITH_HELP - Failed
>> 39 CMake Error at cmake/FindLibStdCpp.cmake:205 (message):
40 GROMACS requires C++17, but a test of such functionality in the C+
+
41 standard library failed to compile. The g++ found at /usr/ found
via
42 /usr/bin/g++ had a suitable version, so something else must be the
problem.
43 Call Stack (most recent call first):
44 CMakeLists.txt:94 (find_package)
45

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gromacs-2023.3-5o2h4oy2am56rihtsx6rjl4vh2xqwr6r/spack-build-out.txt


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