Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/45/4571059b7b5d48b7ce52b01389e95d798bf5cf2020523c153ff27b498153c9cb.tar.gz
==> No patches needed for perl-libxml-perl
==> perl-libxml-perl: Executing phase: 'configure'
==> perl-libxml-perl: Executing phase: 'build'
==> perl-libxml-perl: Executing phase: 'install'
==> perl-libxml-perl: Successfully installed perl-libxml-perl-0.08-fmux5cxmmcx37apggilbhblukwx2z3gz
Stage: 4.05s. Configure: 5.92s. Build: 9.24s. Install: 14.29s. Post-install: 1.13s. Total: 35.17s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-libxml-perl-0.08-fmux5cxmmcx37apggilbhblukwx2z3gz
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-xml-namespacesupport-1.12_9-mb3nde22uvfshw5vrgfxp7y4hnawumyf
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-setuptools-68.0.0-umhokgnekqyzlgjhl6pifea67uvzwnge
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/texinfo-7.0.3-vkcp6hi7jyqa2rhdb2chqfqjpdmdk63b
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libiconv-1.17-nh4rfr3f3pcowrx2xcn2l45yyfy3xzk6
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/pcre2-10.42-6kbyqamjjurixzzgishkv3abmew2p6xx
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libmd-1.0.4-c6kxvz3uxe2gfan53cddxzubiobsk6j7
==> Installing perl-error-0.17029-ku3emfcwrrccpxi6pai6so4lgbqrygmg [55/94]
==> No binary for perl-error-0.17029-ku3emfcwrrccpxi6pai6so4lgbqrygmg found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/1a/1a23f7913032aed6d4b68321373a3899ca66590f4727391a091ec19c95bf7adc.tar.gz
==> No patches needed for perl-error
==> perl-error: Executing phase: 'configure'
==> perl-error: Executing phase: 'build'
==> perl-error: Executing phase: 'install'
==> perl-error: Successfully installed perl-error-0.17029-ku3emfcwrrccpxi6pai6so4lgbqrygmg
Stage: 3.86s. Configure: 6.06s. Build: 8.93s. Install: 8.74s. Post-install: 0.91s. Total: 29.18s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-error-0.17029-ku3emfcwrrccpxi6pai6so4lgbqrygmg
==> Installing perl-data-stag-0.14-jk4vgwe3z2itwssbikf3tnmvknckrkzs [56/94]
==> No binary for perl-data-stag-0.14-jk4vgwe3z2itwssbikf3tnmvknckrkzs found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/4a/4ab122508d2fb86d171a15f4006e5cf896d5facfa65219c0b243a89906258e59.tar.gz
==> No patches needed for perl-data-stag
==> perl-data-stag: Executing phase: 'configure'
==> perl-data-stag: Executing phase: 'build'
==> perl-data-stag: Executing phase: 'install'
==> perl-data-stag: Successfully installed perl-data-stag-0.14-jk4vgwe3z2itwssbikf3tnmvknckrkzs
Stage: 6.95s. Configure: 5.82s. Build: 25.74s. Install: 31.25s. Post-install: 1.79s. Total: 1m 12.45s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-data-stag-0.14-jk4vgwe3z2itwssbikf3tnmvknckrkzs
==> Installing perl-ipc-run-20220807.0-fzgi2e3hhwdsbmlhb7ze43xnzn6o7rkl [57/94]
==> No binary for perl-ipc-run-20220807.0-fzgi2e3hhwdsbmlhb7ze43xnzn6o7rkl found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/27/277d781dbbc98af18e979c7ef36f222513d7361742c52507c3348b265f6f5e69.tar.gz
==> No patches needed for perl-ipc-run
==> perl-ipc-run: Executing phase: 'configure'
==> perl-ipc-run: Executing phase: 'build'
==> perl-ipc-run: Executing phase: 'install'
==> perl-ipc-run: Successfully installed perl-ipc-run-20220807.0-fzgi2e3hhwdsbmlhb7ze43xnzn6o7rkl
Stage: 5.12s. Configure: 7.55s. Build: 8.89s. Install: 11.34s. Post-install: 1.21s. Total: 35.96s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-ipc-run-20220807.0-fzgi2e3hhwdsbmlhb7ze43xnzn6o7rkl
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-net-http-6.22-fh3akrhoya27u3yadbdpbds5alvjfc36
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-www-robotrules-6.02-jzusnetno3ppms75uw2pgelitjuxppzz
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-exception-class-1.45-oreecz43ydjxhzuelywz3wnlykkh5i6w
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-file-listing-6.04-he3ipxenj45vt4dduqelpylm33lidpsj
==> Installing perl-text-diff-1.45-jypdrsuhjchr346rcmfumcqbmbh6e3fv [62/94]
==> No binary for perl-text-diff-1.45-jypdrsuhjchr346rcmfumcqbmbh6e3fv found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/e8/e8baa07b1b3f53e00af3636898bbf73aec9a0ff38f94536ede1dbe96ef086f04.tar.gz
==> No patches needed for perl-text-diff
==> perl-text-diff: Executing phase: 'configure'
==> perl-text-diff: Executing phase: 'build'
==> perl-text-diff: Executing phase: 'install'
==> perl-text-diff: Successfully installed perl-text-diff-1.45-jypdrsuhjchr346rcmfumcqbmbh6e3fv
Stage: 3.36s. Configure: 5.75s. Build: 8.17s. Install: 9.52s. Post-install: 1.04s. Total: 28.95s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-text-diff-1.45-jypdrsuhjchr346rcmfumcqbmbh6e3fv
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-html-parser-3.72-uos5pei7qclni4xfmaujwwvif7bop63a
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-http-message-6.44-fyohav46xe3cygdwncnsmrpfvq5jkl25
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-test-exception-0.43-jcsjqessndsfdafweqwddlnbhvldt6rq
==> Installing perl-xml-sax-writer-0.57-qpesmnpbz3bzk6nx3hlqtom2z3hz26qp [66/94]
==> No binary for perl-xml-sax-writer-0.57-qpesmnpbz3bzk6nx3hlqtom2z3hz26qp found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/3d/3d61d07ef43b0126f5b4de4f415a256fa859fa88dc4fdabaad70b7be7c682cf0.tar.gz
==> No patches needed for perl-xml-sax-writer
==> perl-xml-sax-writer: Executing phase: 'configure'
==> perl-xml-sax-writer: Executing phase: 'build'
==> perl-xml-sax-writer: Executing phase: 'install'
==> perl-xml-sax-writer: Successfully installed perl-xml-sax-writer-0.57-qpesmnpbz3bzk6nx3hlqtom2z3hz26qp
Stage: 3.25s. Configure: 6.48s. Build: 9.38s. Install: 8.41s. Post-install: 1.12s. Total: 29.62s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-xml-sax-writer-0.57-qpesmnpbz3bzk6nx3hlqtom2z3hz26qp
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-xml-sax-1.02-5qirnkfvc73rc7iiaj4s2dmaerwn32y7
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/meson-1.2.2-twpubak4adlis5o22xnr6hnwwalqpco3
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/ruby-3.1.0-63pbqktosnylriecjoawju5bp3ezvhmj
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libbsd-0.11.7-ovlcn2spf2nziz5itskfcmtdbqscyqii
==> Installing perl-test-differences-0.69-6oog5fwirctbjkenzj64igxplljmwrmc [72/94]
==> No binary for perl-test-differences-0.69-6oog5fwirctbjkenzj64igxplljmwrmc found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/18/18f644fdd4a1fef93ef3f7f67df8e95b593d811899f34bcbbaba4d717222f58f.tar.gz
==> No patches needed for perl-test-differences
==> perl-test-differences: Executing phase: 'configure'
==> perl-test-differences: Executing phase: 'build'
==> perl-test-differences: Executing phase: 'install'
==> perl-test-differences: Successfully installed perl-test-differences-0.69-6oog5fwirctbjkenzj64igxplljmwrmc
Stage: 3.53s. Configure: 5.96s. Build: 8.50s. Install: 9.10s. Post-install: 1.15s. Total: 29.15s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-test-differences-0.69-6oog5fwirctbjkenzj64igxplljmwrmc
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-http-daemon-6.01-a2itgdc6kkxdutbyk2chjsslyp5vaqc4
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-http-negotiate-6.01-neuqbcgjbwrf6gnyiz4wwjzvmgays3ak
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-http-cookies-6.10-t44dmyna5fj2svulgamjflz2d6qs5owy
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-xml-libxml-2.0201-dlcoapjqkwdqz3nxrcrjv6kfy3rz4iyx
==> Installing bpp-core-2.4.1-mstvbptez73mhkqd4wessee3eh4ykkyn [78/94]
==> No binary for bpp-core-2.4.1-mstvbptez73mhkqd4wessee3eh4ykkyn found: installing from source
Reversed (or previously applied) patch detected! Assume -R? [n]
Apply anyway? [n]
3 out of 3 hunks ignored -- saving rejects to file src/Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp.rej
Reversed (or previously applied) patch detected! Assume -R? [n]
Apply anyway? [n]
1 out of 1 hunk ignored -- saving rejects to file src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.rej
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/11/1150b8ced22cff23dd4770d7c23fad11239070b44007740e77407f0d746c0af6.tar.gz
==> Patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/bpp-core/clarify_isnan.patch failed.
==> Error: ProcessError: Command exited with status 1:
'/usr/bin/patch' '-s' '-p' '1' '-i' '/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/bpp-core/clarify_isnan.patch' '-d' '.'
==> Warning: Skipping build of bpp-suite-2.4.1-72l45s5bc7xqlsde4c42pi2y7uuho5pa since bpp-core-2.4.1-mstvbptez73mhkqd4wessee3eh4ykkyn failed
==> Warning: Skipping build of prank-170427-tbg73aboydlt74dio3jtg4wrixwti4e4 since bpp-suite-2.4.1-72l45s5bc7xqlsde4c42pi2y7uuho5pa failed
==> Warning: Skipping build of bpp-phyl-2.4.1-e5xrouevhppyyelrtpvnwr332qxyc4no since bpp-core-2.4.1-mstvbptez73mhkqd4wessee3eh4ykkyn failed
==> Warning: Skipping build of bpp-seq-2.4.1-zeyanrtkxuk6qwtv6tnezamafvrztwzz since bpp-core-2.4.1-mstvbptez73mhkqd4wessee3eh4ykkyn failed
==> Warning: Skipping build of bpp-popgen-2.4.1-tbtcl2cqgrphtboefl4johetthck5j3z since bpp-seq-2.4.1-zeyanrtkxuk6qwtv6tnezamafvrztwzz failed
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/expat-2.5.0-wuv6zzro2s4luf6r3x6zecsjv5ew2xnh
==> Installing perl-test-most-0.38-oft7vkuqivydkbwsafxyu2rczmpcyjkp [80/94]
==> No binary for perl-test-most-0.38-oft7vkuqivydkbwsafxyu2rczmpcyjkp found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/08/089eb894f7bace4c37c6334e0e290eb20338ee10223af0c82cbe7281c78382df.tar.gz
==> No patches needed for perl-test-most
==> perl-test-most: Executing phase: 'configure'
==> perl-test-most: Executing phase: 'build'
==> perl-test-most: Executing phase: 'install'
==> perl-test-most: Successfully installed perl-test-most-0.38-oft7vkuqivydkbwsafxyu2rczmpcyjkp
Stage: 3.47s. Configure: 7.13s. Build: 9.03s. Install: 9.94s. Post-install: 1.51s. Total: 33.10s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-test-most-0.38-oft7vkuqivydkbwsafxyu2rczmpcyjkp
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-libwww-perl-6.68-uqujrm7oqi72of46ny3uoo2d2q2fjhoz
==> Installing perl-xml-parser-2.46-sjyrtkfqpqhb6cuvvnejkjr25eajdoo4 [82/94]
==> No binary for perl-xml-parser-2.46-sjyrtkfqpqhb6cuvvnejkjr25eajdoo4 found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/d3/d331332491c51cccfb4cb94ffc44f9cd73378e618498d4a37df9e043661c515d.tar.gz
==> No patches needed for perl-xml-parser
==> perl-xml-parser: Executing phase: 'configure'
==> perl-xml-parser: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

1 error found in build log:
23 Note that if you build against a shareable library in a non-standard
location
24 you may (on some platforms) also have to set your LD_LIBRARY_PATH en
vironment
25 variable at run time for perl to find the library.
26
27 ==> perl-xml-parser: Executing phase: 'build'
28 ==> [2024-03-21-08:12:03.217589] 'make' '-j16'
>> 29 make: *** No targets specified and no makefile found. Stop.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-perl-xml-parser-2.46-sjyrtkfqpqhb6cuvvnejkjr25eajdoo4/spack-build-out.txt

==> Warning: Skipping build of perl-xml-twig-3.52-tcp4kneidhqnko2pjoykptzqnrnsspju since perl-xml-parser-2.46-sjyrtkfqpqhb6cuvvnejkjr25eajdoo4 failed
==> Warning: Skipping build of perl-xml-dom-1.46-bumjywkvau47l4wvsjgdccxi7hnilwlj since perl-xml-parser-2.46-sjyrtkfqpqhb6cuvvnejkjr25eajdoo4 failed
==> Warning: Skipping build of perl-xml-dom-xpath-0.14-hsktdbik5lnhdsxesrrkfmmn4g55qk5e since perl-xml-dom-1.46-bumjywkvau47l4wvsjgdccxi7hnilwlj failed
==> Warning: glib-2.78.0-74p33i3rlx64dojcar5xzu3de6xzra6v failed to install
==> Warning: Skipping build of exonerate-2.4.0-2gsrngllpzse2bn7secnu3y22eyopxzg since glib-2.78.0-74p33i3rlx64dojcar5xzu3de6xzra6v failed
==> Error: guidance-2.02-xdk4xkf3kms4gyqg4mdca4fzzgddznh5: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).