Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
Compiler | Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38 |
---|---|
Result | Dependency Error |
Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external curl-7.61.1-qsvgylcys5hkzdnl2pdh4blrprxlsp5m)
[+] /usr (external ncurses-6.1-a6lc7oq2dlgphtibbpp6x72mqgmscros)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /usr (external hwloc-2.2.0-uek4abd3fnx3x4ulqymndgwqr7ib3cu3)
[+] /usr (external numactl-2.0.12-a4f4qsoazgw5jwz5odr7me5tumwr3sou)
[+] /usr (external perl-5.26.3-rkgbbov2pluaat3kknhtag5ui3vltkqk)
[+] /usr (external pkgconf-1.4.2-mmjuloqcob6vnd6bylwgum67waaa3kht)
[+] /usr (external libevent-2.1.8-sq47i6xgucp7k3b3reph6vmchx5xr2i4)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/pmix-5.0.1-lzwu5zkztox3fndgwrprc6l2xbqqrxwk
==> Installing openmpi-4.1.6-svzknaie2dl4yhkhwsd2neambe4rh6rf [13/14]
==> No binary for openmpi-4.1.6-svzknaie2dl4yhkhwsd2neambe4rh6rf found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/f7/f740994485516deb63b5311af122c265179f5328a0d857a567b85db00b11e415.tar.bz2
==> No patches needed for openmpi
==> openmpi: Executing phase: 'autoreconf'
==> openmpi: Executing phase: 'configure'
==> openmpi: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'
15 errors found in build log:
921 looking for library without search path
922 checking for library containing hwloc_topology_init... -lhwloc
923 checking if libhwloc requires libnl v1 or v3...
924 checking if external hwloc version is 1.5 or greater... yes
925 checking whether HWLOC_OBJ_OSDEV_COPROC is declared... yes
926 checking for hwloc_topology_dup... yes
>> 927 checking if external hwloc supports XML... /data/rccs-sdt/a01008/t
mpdir/spack-stage/spack-stage-openmpi-4.1.6-svzknaie2dl4yhkhwsd2ne
ambe4rh6rf/spack-src/configure: line 80626: /usr/bin/lstopo: No su
ch file or directory
928 no
929 checking infiniband/verbs.h usability... no
930 checking infiniband/verbs.h presence... no
931 checking for infiniband/verbs.h... no
932 checking if MCA component hwloc:external can compile... yes
933
...
4574 ==> [2024-03-22-19:32:36.358863] FILTER FILE: /data/rccs-sdt/a0100
8/tmpdir/spack-stage/spack-stage-openmpi-4.1.6-svzknaie2dl4yhkhwsd
2neambe4rh6rf/spack-src/ompi/mca/io/romio321/romio/libtool [replac
ing "/\S*/crtendS\.o"]
4575 ==> openmpi: Executing phase: 'build'
4576 ==> [2024-03-22-19:32:36.611929] 'make' '-j16' 'V=1'
4577 CDPATH="${ZSH_VERSION+.}:" && cd /data/rccs-sdt/a01008/tmpdir/spac
k-stage/spack-stage-openmpi-4.1.6-svzknaie2dl4yhkhwsd2neambe4rh6rf
/spack-src && /bin/sh /vol0003/rccs-sdt/data/a01008/tmpdir/spack-s
tage/spack-stage-openmpi-4.1.6-svzknaie2dl4yhkhwsd2neambe4rh6rf/sp
ack-src/config/missing autoconf
4578 cd /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-openmpi-4
.1.6-svzknaie2dl4yhkhwsd2neambe4rh6rf/spack-src && /bin/sh /vol000
3/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-openmpi-4.1.
6-svzknaie2dl4yhkhwsd2neambe4rh6rf/spack-src/config/missing automa
ke-1.15 --foreign
4579 /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-openm
pi-4.1.6-svzknaie2dl4yhkhwsd2neambe4rh6rf/spack-src/config/missing
: line 81: automake-1.15: command not found
>> 4580 WARNING: 'automake-1.15' is missing on your system.
4581 You should only need it if you modified 'Makefile.am' or
4582 'configure.ac' or m4 files included by 'configure.ac'.
4583 The 'automake' program is part of the GNU Automake packag
e:
4584 <http://www.gnu.org/software/automake>
4585 It also requires GNU Autoconf, GNU m4 and Perl in order t
o run:
4586 <http://www.gnu.org/software/autoconf>
4587 <http://www.gnu.org/software/m4/>
4588 <http://www.perl.org/>
>> 4589 make: *** [Makefile:1818: /data/rccs-sdt/a01008/tmpdir/spack-stage
/spack-stage-openmpi-4.1.6-svzknaie2dl4yhkhwsd2neambe4rh6rf/spack-
src/Makefile.in] Error 1
4590 make: *** Waiting for unfinished jobs....
>> 4591 sh: config/opal_get_version.sh: No such file or directory
>> 4592 sh: config/opal_get_version.sh: No such file or directory
>> 4593 sh: config/opal_get_version.sh: No such file or directory
>> 4594 sh: config/opal_get_version.sh: No such file or directory
>> 4595 sh: config/opal_get_version.sh: No such file or directory
>> 4596 sh: config/opal_get_version.sh: No such file or directory
>> 4597 sh: config/opal_get_version.sh: No such file or directory
>> 4598 sh: config/opal_get_version.sh: No such file or directory
>> 4599 sh: config/opal_get_version.sh: No such file or directory
>> 4600 sh: config/opal_get_version.sh: No such file or directory
>> 4601 sh: config/opal_get_version.sh: No such file or directory
>> 4602 sh: config/opal_get_version.sh: No such file or directory
See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-openmpi-4.1.6-svzknaie2dl4yhkhwsd2neambe4rh6rf/spack-build-out.txt
==> Warning: Skipping build of hyphy-2.5.51hf-vmdkzd3wzh2ahzedywh7af4lv24jmfuv since openmpi-4.1.6-svzknaie2dl4yhkhwsd2neambe4rh6rf failed
==> Error: hyphy-2.5.51hf-vmdkzd3wzh2ahzedywh7af4lv24jmfuv: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).