Failed Reason

Failed to install dependency package :
------------------------------------------------
19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src -I/vol0004/apps/oss
/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q6
6snjvhvy7im57hncbgpirmddrb5sk/include/python3.10 -c samtools/bam_ca
t.c.pysam.c -o build/temp.linux-aarch64-cpython-310/samtools/bam_ca
t.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -W
no-error=declaration-after-statement
179 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/l
ib/spack/env/fj/fcc -Wno-unused-result -Wsign-compare -Wunreachable
-code -DNDEBUG -g -fwrapv -O3 -Wall -KPIC -fPIC -I/vol0003/rccs-sdt
/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel
8-a64fx/fj-4.10.0/htslib-1.12-kp632r2f5qli56ood7amdbjl2k5obxg7/incl
ude -I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-
py-pysam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src/samtools
-I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-py-
pysam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src/samtools/lz
4 -I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-py
-pysam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src/bcftools -
I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-py-py
sam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src/pysam -I/vol0
003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-py-pysam-0.
19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src -I/vol0004/apps/oss
/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q6
6snjvhvy7im57hncbgpirmddrb5sk/include/python3.10 -c samtools/bam_co
lor.c.pysam.c -o build/temp.linux-aarch64-cpython-310/samtools/bam_
color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compar
e -Wno-error=declaration-after-statement
180 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/l
ib/spack/env/fj/fcc -Wno-unused-result -Wsign-compare -Wunreachable
-code -DNDEBUG -g -fwrapv -O3 -Wall -KPIC -fPIC -I/vol0003/rccs-sdt
/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel
8-a64fx/fj-4.10.0/htslib-1.12-kp632r2f5qli56ood7amdbjl2k5obxg7/incl
ude -I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-
py-pysam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src/samtools
-I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-py-
pysam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src/samtools/lz
4 -I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-py
-pysam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src/bcftools -
I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-py-py
sam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src/pysam -I/vol0
003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-py-pysam-0.
19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src -I/vol0004/apps/oss
/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q6
6snjvhvy7im57hncbgpirmddrb5sk/include/python3.10 -c samtools/bam_co
nsensus.c.pysam.c -o build/temp.linux-aarch64-cpython-310/samtools/
bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sig
n-compare -Wno-error=declaration-after-statement
181 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/l
ib/spack/env/fj/fcc -Wno-unused-result -Wsign-compare -Wunreachable
-code -DNDEBUG -g -fwrapv -O3 -Wall -KPIC -fPIC -I/vol0003/rccs-sdt
/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel
8-a64fx/fj-4.10.0/htslib-1.12-kp632r2f5qli56ood7amdbjl2k5obxg7/incl
ude -I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-
py-pysam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src/samtools
-I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-py-
pysam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src/samtools/lz
4 -I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-py
-pysam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src/bcftools -
I/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-py-py
sam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src/pysam -I/vol0
003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-py-pysam-0.
19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-src -I/vol0004/apps/oss
/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q6
6snjvhvy7im57hncbgpirmddrb5sk/include/python3.10 -c samtools/bam_fa
stq.c.pysam.c -o build/temp.linux-aarch64-cpython-310/samtools/bam_
fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compar
e -Wno-error=declaration-after-statement
>> 182 samtools/bam_fastq.c.pysam.c:347:25: error: use of undeclared ident
ifier 'FASTQ_OPT_RNUM'
183 hts_set_opt(fp, FASTQ_OPT_RNUM, 1);
184 ^
>> 185 samtools/bam_fastq.c.pysam.c:350:25: error: use of undeclared ide
ntifier 'FASTQ_OPT_CASAVA'
186 hts_set_opt(fp, FASTQ_OPT_CASAVA, 1);
187 ^
>> 188 samtools/bam_fastq.c.pysam.c:352:21: error: use of undeclared ide
ntifier 'FASTQ_OPT_BARCODE'
189 hts_set_opt(fp, FASTQ_OPT_BARCODE, opts->barcode_tag);
190 ^
>> 191 samtools/bam_fastq.c.pysam.c:363:25: error: use of undeclared ide
ntifier 'FASTQ_OPT_AUX'
192 hts_set_opt(fp, FASTQ_OPT_AUX, tag_list.s);
193 ^
194 4 errors generated.
195 error: command '/vol0003/rccs-sdt/data/a01008/spack-all-test/env-
20240227/spack/lib/spack/env/fj/fcc' failed with exit code 1
196 error: subprocess-exited-with-error
197

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-py-pysam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt/spack-build-out.txt

==> Warning: Skipping build of py-htseq-0.11.2-gazctvy7idj7lvmtah6mpz7gvoddt6gt since py-pysam-0.19.1-75iadzc7tmdsyxumqqebduwi37stfcrt failed
==> Warning: Skipping build of kaiju-1.6.2-yaoxsjq3xquocv46mirpf35fjohs4rgp since py-htseq-0.11.2-gazctvy7idj7lvmtah6mpz7gvoddt6gt failed
==> Installing py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw [37/40]
==> No binary for py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/c8/c8c6c72d4a9f831f328efb1312642a1cafafaa88981d9ab76368d50d07d93cbe.tar.gz
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch
==> py-numpy: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'/vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/bin/python3.10' '-m' 'pip' '-vvv' '--no-input' '--no-cache-dir' '--disable-pip-version-check' 'install' '--no-deps' '--ignore-installed' '--no-build-isolation' '--no-warn-script-location' '--no-index' '--prefix=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw' '--config-settings=builddir=build' '--config-settings=compile-args=-j16' '--config-settings=setup-args=-Dblas=fjlapackexsve' '--config-settings=setup-args=-Dlapack=fjlapackexsve' '.'

2 errors found in build log:
64
65 Library m found: YES
66 Found CMake: /usr/bin/cmake (3.20.2)
67 WARNING: CMake Toolchain: Failed to determine CMake compilers stat
e
68 Run-time dependency fjlapackexsve found: NO (tried pkgconfig and c
make)
69
>> 70 ../numpy/meson.build:169:4: ERROR: Problem encountered: No BLAS libr
ary detected! Install one, or use the `allow-noblas` build option (n
ote, this may be up to 100x slower for some linear algebra operation
s).
71
72 A full log can be found at /vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7
yw/spack-src/build/meson-logs/meson-log.txt
73 error: subprocess-exited-with-error
74
75 × Preparing metadata (pyproject.toml) did not run successfully.
76 │ exit code: 1
77 ╰─> See above for output.
78
79 note: This error originates from a subprocess, and is likely not a
problem with pip.
80 full command: /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-
a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/bin/py
thon3.10 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/s
pack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pip-23.1.2-e5mqkkojghz
4zpl6zboxzql3mko55ccd/lib/python3.10/site-packages/pip/_vendor/pypro
ject_hooks/_in_process/_in_process.py prepare_metadata_for_build_whe
el /data/rccs-sdt/a01008/tmpdir/tmph7rek0b7
81 cwd: /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-
py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw/spack-src
82 Preparing metadata (pyproject.toml): finished with status 'error'
>> 83 error: metadata-generation-failed
84
85 × Encountered error while generating package metadata.
86 ╰─> See above for output.
87
88 note: This is an issue with the package mentioned above, not pip.
89 hint: See above for details.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw/spack-build-out.txt

==> Warning: Skipping build of py-matplotlib-3.3.4-yh4llpugmxxm2k6yguxuxfdfp3qpqk67 since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Error: kaiju-1.6.2-yaoxsjq3xquocv46mirpf35fjohs4rgp: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).