Failed Reason

Failed to install dependency package :
------------------------------------------------
872 ^
>> 873 ../jkweb/bPlusTree.h:118:64: error: unknown type name 'bits64'
874 void bptFileBulkIndexToOpenFile(void *itemArray, int itemSize, bits
64 itemCount, bits32 blockSize,
875 ^
>> 876 ../jkweb/bPlusTree.h:118:82: error: unknown type name 'bits32'
877 void bptFileBulkIndexToOpenFile(void *itemArray, int itemSize, bits
64 itemCount, bits32 blockSize,
878
^
>> 879 ../jkweb/bPlusTree.h:119:50: error: unknown type name 'bits32'
880 void (*fetchKey)(const void *va, char *keyBuf), bits32 keyS
ize,
881 ^
>> 882 ../jkweb/bPlusTree.h:120:37: error: unknown type name 'bits32'
883 void* (*fetchVal)(const void *va), bits32 valSize, FILE *f)
;
884 ^
>> 885 ../jkweb/bPlusTree.h:120:53: error: unknown type name 'FILE'
886 void* (*fetchVal)(const void *va), bits32 valSize, FILE *f)
;
887 ^
888 fatal error: too many errors emitted, stopping now [-ferror-limit=]
889 20 errors generated.
>> 890 make[2]: *** [Makefile:419: bbiAugment.o] Error 1
891 make[2]: *** Waiting for unfinished jobs....
892 In file included from fastq_stuff.c:5:
>> 893 ../beato/fastq_stuff.h:22:1: error: unknown type name 'boolean'
894 boolean read_fastq_auto(struct fastq_auto* fq, struct lineFile* lf,
boolean just_seq_qual);
895 ^
896 ../beato/fastq_stuff.h:22:55: warning: declaration of 'struct lineF
ile' will not be visible outside of this function [-Wvisibility]
897 boolean read_fastq_auto(struct fastq_auto* fq, struct lineFile* lf,
boolean just_seq_qual);
898 ^
>> 899 ../beato/fastq_stuff.h:22:69: error: unknown type name 'boolean'
900 boolean read_fastq_auto(struct fastq_auto* fq, struct lineFile* lf,
boolean just_seq_qual);
901
^
>> 902 ../beato/fastq_stuff.h:27:31: error: unknown type name 'FILE'
903 void fprint_fastq_auto_normal(FILE* f, struct fastq_auto fq, int wr
ap_len);
904 ^
905 In file included from favs.c:8:
906 In file included from ../beato/favs.h:5:
>> 907 ../jkweb/hash.h:62:5: error: unknown type name 'bits32'
908 bits32 hashVal;
909 ^
>> 910 ../jkweb/hash.h:68:5: error: unknown type name 'bits32'
911 bits32 mask; /* Mask hashCrc with this to get it to fit
table. */
912 ^
>> 913 ../jkweb/hash.h:74:5: error: unknown type name 'boolean'
914 boolean autoExpand; /* Automatically expand hash */
915 ^
>> 916 ../jkweb/hash.h:91:1: error: unknown type name 'bits32'
917 bits32 hashString(char *string);
918 ^
>> 919 ../jkweb/hash.h:94:1: error: unknown type name 'bits32'
920 bits32 hashCrc(char *string);
921 ^
>> 922 ../jkweb/hash.h:224:45: error: unknown type name 'boolean'
923 struct hash *newHashExt(int powerOfTwoSize, boolean useLocalMem);
924 ^
>> 925 ../jkweb/hash.h:258:53: error: unknown type name 'FILE'
926 void hashPrintStats(struct hash *hash, char *label, FILE *fh);
927 ^
>> 928 ../jkweb/hash.h:264:1: error: unknown type name 'boolean'
929 boolean hashMayRemove(struct hash *hash, char *name);
930 ^
931 In file included from metaBig.c:5:
>> 932 ../beato/bbiAugment.h:9:52: error: unknown type name 'bits32'
933 struct bbiFile* bbiFileOpenWithDir(char* fileName, bits32 sig, char
* typeName, char* udcDir);
934 ^
935 In file included from sax.c:5:
>> 936 ../beato/sax.h:6:50: error: unknown type name 'size_t'
937 char* sax_from_array_force_window(double* array, size_t length, siz
e_t alphabet_size, size_t window_size, double mean, double std);
938 ^
>> 939 ../beato/sax.h:6:65: error: unknown type name 'size_t'
940 char* sax_from_array_force_window(double* array, size_t length, siz
e_t alphabet_size, size_t window_size, double mean, double std);
941 ^
>> 942 ../beato/sax.h:6:87: error: unknown type name 'size_t'
943 char* sax_from_array_force_window(double* array, size_t length, siz
e_t alphabet_size, size_t window_size, double mean, double std);
944
^
>> 945 ../beato/sax.h:11:37: error: unknown type name 'size_t'
946 char* sax_from_array(double* array, size_t length, size_t alphabet_
size);
947 ^
>> 948 ../beato/sax.h:11:52: error: unknown type name 'size_t'
949 char* sax_from_array(double* array, size_t length, size_t alphabet_
size);
950 ^
951 In file included from stuff.c:5:
952 In file included from ../beato/stuff.h:5:
953 In file included from ../jkweb/basicBed.h:13:
954 In file included from ../jkweb/psl.h:13:
>> 955 ../jkweb/localmem.h:22:1: error: unknown type name 'size_t'
956 size_t lmAvailable(struct lm *lm);
957 ^
>> 958 ../jkweb/localmem.h:25:1: error: unknown type name 'size_t'
959 size_t lmSize(struct lm *lm);
960 ^
>> 961 ../jkweb/localmem.h:28:30: error: unknown type name 'size_t'
962 void *lmAlloc(struct lm *lm, size_t size);
963 ^
>> 964 ../jkweb/localmem.h:31:47: error: unknown type name 'size_t'
965 void *lmAllocMoreMem(struct lm *lm, void *pt, size_t oldSize, size_
t newSize);
966 ^
>> 967 ../jkweb/localmem.h:31:63: error: unknown type name 'size_t'
968 void *lmAllocMoreMem(struct lm *lm, void *pt, size_t oldSize, size_
t newSize);
969 ^
>> 970 ../jkweb/localmem.h:35:43: error: unknown type name 'size_t'
971 void *lmCloneMem(struct lm *lm, void *pt, size_t size);
972 ^
973 1 warning and 3 errors generated.
>> 974 make[2]: *** [Makefile:419: fastq_stuff.o] Error 1
975 8 errors generated.
>> 976 make[2]: *** [Makefile:419: favs.o] Error 1
977 5 errors generated.
>> 978 make[2]: *** [Makefile:419: sax.o] Error 1
979 6 errors generated.
>> 980 make[2]: *** [Makefile:419: stuff.o] Error 1
981 mv -f .deps/cluster.Tpo .deps/cluster.Po
982 1 error generated.
983 mv -f .deps/metaBigBam.Tpo .deps/metaBigBam.Po
>> 984 make[2]: *** [Makefile:420: metaBig.o] Error 1
985 mv -f .deps/random_coord.Tpo .deps/random_coord.Po
986 mv -f .deps/extrema.Tpo .deps/extrema.Po
987 mv -f .deps/bigs.Tpo .deps/bigs.Po
988 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-libbeato-master-wrmsytcwg4h3go2myboyfv7vv6vau
eoh/spack-src/beato'
>> 989 make[1]: *** [Makefile:634: all-recursive] Error 1
990 make[1]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-libbeato-master-wrmsytcwg4h3go2myboyfv7vv6vau
eoh/spack-src'
>> 991 make: *** [Makefile:551: all] Error 2

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-libbeato-master-wrmsytcwg4h3go2myboyfv7vv6vaueoh/spack-build-out.txt