List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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libhio 1.4.1.6

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external bzip2-1.0.6-r4iabrte3nd5eemcd5v5coc3kvsnoyzu)
[+] /opt/FJSVxtclanga/tcsds-mpi-latest (external fujitsu-mpi-head-3njd5uwuazr4j2no6fqh4cpjmezknh3z)
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /usr (external pkgconf-1.4.2-mmjuloqcob6vnd6bylwgum67waaa3kht)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/json-c-0.16-tx4gocc4f3cjm6ggjst7q6e3xhl3r2ya
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/hdf5-1.14.3-qyemvkveh5ldexwnl2xrex2gtauttyvc
==> Installing libhio-1.4.1.6-4gqdv4afw3axb6yyl4vzxl7lcnnadxns [9/9]
==> No binary for libhio-1.4.1.6-4gqdv4afw3axb6yyl4vzxl7lcnnadxns found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/86/863e7274f9e32d97bd5d9e6745ad9449735bdc8bd5623f152a32be45e6f3a212.tar.bz2
==> No patches needed for libhio
==> libhio: Executing phase: 'autoreconf'
==> libhio: Executing phase: 'configure'
==> libhio: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

22 errors found in build log:
380 Making all in hdf5-hio
381 make[1]: Entering directory '/vol0003/rccs-sdt/data/a01008/tmpdir/s
pack-stage/spack-stage-libhio-1.4.1.6-4gqdv4afw3axb6yyl4vzxl7lcnnad
xns/spack-src/hdf5-hio'
382 Making all in src
383 make[2]: Entering directory '/vol0003/rccs-sdt/data/a01008/tmpdir/s
pack-stage/spack-stage-libhio-1.4.1.6-4gqdv4afw3axb6yyl4vzxl7lcnnad
xns/spack-src/hdf5-hio/src'
384 /bin/sh ../../libtool --tag=CC --mode=compile /opt/FJSVxtclanga/
tcsds-mpi-latest/bin/mpifcc -DHAVE_CONFIG_H -I. -I/data/rccs-sdt/a0
1008/tmpdir/spack-stage/spack-stage-libhio-1.4.1.6-4gqdv4afw3axb6yy
l4vzxl7lcnnadxns/spack-src/hdf5-hio/src -I../../src/include -I/vo
l0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/sp
ack/linux-rhel8-a64fx/fj-4.10.0/json-c-0.16-tx4gocc4f3cjm6ggjst7q6e
3xhl3r2ya/include -I/vol0003/rccs-sdt/data/a01008/spack-all-test/en
v-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/json-c-0.16-
tx4gocc4f3cjm6ggjst7q6e3xhl3r2ya/include/json-c -I/vol0003/rccs-s
dt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rh
el8-a64fx/fj-4.10.0/hdf5-1.14.3-qyemvkveh5ldexwnl2xrex2gtauttyvc/in
clude -pthread -g -O2 -std=gnu11 -MT libh5fdhio_la-H5FDhio.lo -MD
-MP -MF .deps/libh5fdhio_la-H5FDhio.Tpo -c -o libh5fdhio_la-H5FDhi
o.lo `test -f 'H5FDhio.c' || echo '/data/rccs-sdt/a01008/tmpdir/spa
ck-stage/spack-stage-libhio-1.4.1.6-4gqdv4afw3axb6yyl4vzxl7lcnnadxn
s/spack-src/hdf5-hio/src/'`H5FDhio.c
385 libtool: compile: /opt/FJSVxtclanga/tcsds-mpi-latest/bin/mpifcc -D
HAVE_CONFIG_H -I. -I/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-
stage-libhio-1.4.1.6-4gqdv4afw3axb6yyl4vzxl7lcnnadxns/spack-src/hdf
5-hio/src -I../../src/include -I/vol0003/rccs-sdt/data/a01008/spack
-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/
json-c-0.16-tx4gocc4f3cjm6ggjst7q6e3xhl3r2ya/include -I/vol0003/rcc
s-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux
-rhel8-a64fx/fj-4.10.0/json-c-0.16-tx4gocc4f3cjm6ggjst7q6e3xhl3r2ya
/include/json-c -I/vol0003/rccs-sdt/data/a01008/spack-all-test/env-
20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/hdf5-1.14.3-qy
emvkveh5ldexwnl2xrex2gtauttyvc/include -pthread -g -O2 -std=gnu11 -
MT libh5fdhio_la-H5FDhio.lo -MD -MP -MF .deps/libh5fdhio_la-H5FDhio
.Tpo -c H5FDhio.c -fPIC -DPIC -o .libs/libh5fdhio_la-H5FDhio.o
>> 386 H5FDhio.c:72:5: error: unknown type name 'H5FD_t'
387 H5FD_t pub; /*public stuff, must be first */
388 ^
>> 389 H5FDhio.c:85:32: error: unknown type name 'H5FD_t'
390 static void *H5FD_hio_fapl_get(H5FD_t *_file);
391 ^
>> 392 H5FDhio.c:88:8: error: unknown type name 'H5FD_t'
393 static H5FD_t *H5FD_hio_open(const char *name, unsigned flags, hid_
t fapl_id,
394 ^
>> 395 H5FDhio.c:90:30: error: unknown type name 'H5FD_t'
396 static herr_t H5FD_hio_close(H5FD_t *_file);
397 ^
>> 398 H5FDhio.c:91:36: error: unknown type name 'H5FD_t'
399 static herr_t H5FD_hio_query(const H5FD_t *_f1, unsigned long *flag
s);
400 ^
>> 401 H5FDhio.c:92:39: error: unknown type name 'H5FD_t'
402 static haddr_t H5FD_hio_get_eoa(const H5FD_t *_file, H5FD_mem_t typ
e);
403 ^
>> 404 H5FDhio.c:93:32: error: unknown type name 'H5FD_t'
405 static herr_t H5FD_hio_set_eoa(H5FD_t *_file, H5FD_mem_t type, hadd
r_t addr);
406 ^
>> 407 H5FDhio.c:95:36: error: unknown type name 'H5FD_t'
408 static herr_t H5FD_hio_get_handle(H5FD_t *_file, hid_t H5_ATTR_UNU
SED fapl, void** file_handle);
409 ^
>> 410 H5FDhio.c:96:29: error: unknown type name 'H5FD_t'
411 static herr_t H5FD_hio_read(H5FD_t *_file, H5FD_mem_t type, hid_t d
xpl_id, haddr_t addr,
412 ^
>> 413 H5FDhio.c:98:30: error: unknown type name 'H5FD_t'
414 static herr_t H5FD_hio_write(H5FD_t *_file, H5FD_mem_t type, hid_t
dxpl_id, haddr_t addr,
415 ^
>> 416 H5FDhio.c:102:39: error: unknown type name 'H5FD_t'
417 static haddr_t H5FD_hio_get_eof(const H5FD_t *_file, H5FD_mem_t typ
e);
418 ^
>> 419 H5FDhio.c:111:30: error: unknown type name 'H5FD_t'
420 static herr_t H5FD_hio_flush(H5FD_t *_file, hid_t dxpl_id, hbool_t
closing);
421 ^
>> 422 H5FDhio.c:123:14: error: unknown type name 'H5FD_class_t'
423 static const H5FD_class_t H5FD_hio_g = {
424 ^
>> 425 H5FDhio.c:157:5: error: use of undeclared identifier 'H5FD_FLMAP_DI
CHOTOMY'
426 H5FD_FLMAP_DICHOTOMY /*fl_map */
427 ^
428 H5FDhio.c:183:22: warning: implicit declaration of function 'H5FDre
gister' is invalid in C99 [-Wimplicit-function-declaration]
429 H5FD_HIO_g = H5FDregister((const H5FD_class_t *)&H5FD_hio_g
);
430 ^
>> 431 H5FDhio.c:183:42: error: unknown type name 'H5FD_class_t'
432 H5FD_HIO_g = H5FDregister((const H5FD_class_t *)&H5FD_hio_g
);
433 ^
>> 434 H5FDhio.c:294:19: error: unknown type name 'H5FD_t'
435 H5FD_hio_fapl_get(H5FD_t *_file)
436 ^
>> 437 H5FDhio.c:519:25: error: unknown type name 'H5FD_t'
438 hio_return_t hio_reopen(H5FD_t *_file, int flag)
439 ^
>> 440 H5FDhio.c:581:8: error: unknown type name 'H5FD_t'
441 static H5FD_t *
442 ^
>> 443 H5FDhio.c:593:5: error: use of undeclared identifier 'H5FD_t'
444 H5FD_t *ret_value=NULL; /* Return value */
445 ^
446 fatal error: too many errors emitted, stopping now [-ferror-limit=]
447 1 warning and 20 errors generated.
>> 448 make[2]: *** [Makefile:469: libh5fdhio_la-H5FDhio.lo] Error 1
449 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-libhio-1.4.1.6-4gqdv4afw3axb6yyl4vzxl7lcnnadx
ns/spack-src/hdf5-hio/src'
>> 450 make[1]: *** [Makefile:382: all-recursive] Error 1
451 make[1]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-libhio-1.4.1.6-4gqdv4afw3axb6yyl4vzxl7lcnnadx
ns/spack-src/hdf5-hio'
>> 452 make: *** [Makefile:495: all-recursive] Error 1

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-libhio-1.4.1.6-4gqdv4afw3axb6yyl4vzxl7lcnnadxns/spack-build-out.txt


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