List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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mapsplice2 2.2.1

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /usr (external ncurses-6.1-a6lc7oq2dlgphtibbpp6x72mqgmscros)
[+] /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk (external python-3.10.8-zcbuy6dnhwhmsrco46b6ayaywy4nrfcy)
[+] /usr (external bzip2-1.0.6-r4iabrte3nd5eemcd5v5coc3kvsnoyzu)
[+] /usr (external curl-7.61.1-qsvgylcys5hkzdnl2pdh4blrprxlsp5m)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /usr (external xz-5.2.4-l5cq5xund4a2b3ikazvehpmbiao6srbv)
[+] /usr (external perl-5.26.3-rkgbbov2pluaat3kknhtag5ui3vltkqk)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/bowtie-1.3.1-6bxx6yzkhw3xx47yuxcd7ntxtd333vxq
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gzip-1.12-u55zm2bfq2mebh4chnmivqkqmbbdw2zi
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libdeflate-1.18-wdq7uvwnauvzqysy24aknbmredmsjh5r
==> Installing htslib-1.17-y6gwptav3s7cgh3q5ui7f65xzrljj2sy [13/15]
==> No binary for htslib-1.17-y6gwptav3s7cgh3q5ui7f65xzrljj2sy found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/76/763779288c40f07646ec7ad98b96c378c739171d162ad98398868783b721839f.tar.bz2
==> No patches needed for htslib
==> htslib: Executing phase: 'autoreconf'
==> htslib: Executing phase: 'configure'
==> htslib: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

1 error found in build log:
85 ==> [2024-03-26-04:10:46.540603] Find (recursive): /data/rccs-sdt/a0
1008/tmpdir/spack-stage/spack-stage-htslib-1.17-y6gwptav3s7cgh3q5ui7
f65xzrljj2sy/spack-src ['libtool']
86 ==> [2024-03-26-04:10:46.725845] Find complete: /data/rccs-sdt/a0100
8/tmpdir/spack-stage/spack-stage-htslib-1.17-y6gwptav3s7cgh3q5ui7f65
xzrljj2sy/spack-src ['libtool']
87 ==> htslib: Executing phase: 'build'
88 ==> [2024-03-26-04:10:46.774746] 'make' '-j16' 'V=1'
89 make: Makefile: Too many levels of symbolic links
90 make: stat: Makefile: Too many levels of symbolic links
>> 91 make: *** No rule to make target 'Makefile'. Stop.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-htslib-1.17-y6gwptav3s7cgh3q5ui7f65xzrljj2sy/spack-build-out.txt

==> Warning: Skipping build of samtools-1.17-uzk2elkrkv44iuaypyqzwm66xp6nbtts since htslib-1.17-y6gwptav3s7cgh3q5ui7f65xzrljj2sy failed
==> Warning: Skipping build of mapsplice2-2.2.1-etgqa26h2bbishwguppld3zxagycwjqf since samtools-1.17-uzk2elkrkv44iuaypyqzwm66xp6nbtts failed
==> Error: mapsplice2-2.2.1-etgqa26h2bbishwguppld3zxagycwjqf: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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