List of Open Source Software which can be built on Fugaku
 |
Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
metabat 2.15
| Compiler | Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38 |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
360 cd /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-met
abat-2.15-kxbnbikmi2yh2t7o4yrm6zd4o5nvj5dy/spack-build-kxbnbik/src
&& /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/
opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv
7kbp6bugdcjc5ph6/bin/cmake -E cmake_link_script CMakeFiles/contigOv
erlaps.dir/link.txt --verbose=1
361 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/lib
/spack/env/fj/case-insensitive/FCC -fopenmp -O3 -DNDEBUG CMakeFile
s/contigOverlaps.dir/contigOverlaps.cpp.o -o contigOverlaps -Wl,-r
path,::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ../co
ntrib/htslib-install/lib/libhts.a ../contrib/zlib-install/lib/libz.
a /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/o
pt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-fpdkui6yha674j4vq
mienjpxohh6fwrs/lib/libboost_program_options-mt.a /vol0003/rccs-sdt
/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel
8-a64fx/fj-4.10.0/boost-1.83.0-fpdkui6yha674j4vqmienjpxohh6fwrs/lib
/libboost_filesystem-mt.a /vol0003/rccs-sdt/data/a01008/spack-all-t
est/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-
1.83.0-fpdkui6yha674j4vqmienjpxohh6fwrs/lib/libboost_system-mt.a /v
ol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/s
pack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-fpdkui6yha674j4vqmien
jpxohh6fwrs/lib/libboost_graph-mt.a /vol0003/rccs-sdt/data/a01008/s
pack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.1
0.0/boost-1.83.0-fpdkui6yha674j4vqmienjpxohh6fwrs/lib/libboost_seri
alization-mt.a /vol0003/rccs-sdt/data/a01008/spack-all-test/env-202
40227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-fpdk
ui6yha674j4vqmienjpxohh6fwrs/lib/libboost_iostreams-mt.a /vol0003/r
ccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/lin
ux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-fpdkui6yha674j4vqmienjpxohh6f
wrs/lib/libboost_regex-mt.a
362 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-metabat-2.15-kxbnbikmi2yh2t7o4yrm6zd4o5nvj5dy
/spack-build-kxbnbik'
363 [ 88%] Built target contigOverlaps
364 In file included from /data/rccs-sdt/a01008/tmpdir/spack-stage/spac
k-stage-metabat-2.15-kxbnbikmi2yh2t7o4yrm6zd4o5nvj5dy/spack-src/src
/metabat2.cpp:1:
>> 365 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-metabat-2.15-k
xbnbikmi2yh2t7o4yrm6zd4o5nvj5dy/spack-src/src/metabat2.h:264:34: er
ror: invalid output constraint '=a' in asm
366 __asm__ __volatile__ ("rdtsc" : "=a" (lo), "=d" (hi));
367 ^
368 1 warning and 1 error generated.
>> 369 make[2]: *** [src/CMakeFiles/metabat2.dir/build.make:79: src/CMakeF
iles/metabat2.dir/metabat2.cpp.o] Error 1
370 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-metabat-2.15-kxbnbikmi2yh2t7o4yrm6zd4o5nvj5dy
/spack-build-kxbnbik'
>> 371 make[1]: *** [CMakeFiles/Makefile2:239: src/CMakeFiles/metabat2.dir
/all] Error 2
372 make[1]: *** Waiting for unfinished jobs....
373 [ 92%] Linking CXX executable jgi_summarize_bam_contig_depths
374 cd /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-met
abat-2.15-kxbnbikmi2yh2t7o4yrm6zd4o5nvj5dy/spack-build-kxbnbik/src
&& /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/
opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv
7kbp6bugdcjc5ph6/bin/cmake -E cmake_link_script CMakeFiles/jgi_summ
arize_bam_contig_depths.dir/link.txt --verbose=1
375 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/lib
/spack/env/fj/case-insensitive/FCC -fopenmp -O3 -DNDEBUG CMakeFile
s/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_dept
hs.cpp.o -o jgi_summarize_bam_contig_depths -Wl,-rpath,:::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::: ../contrib/htslib-ins
tall/lib/libhts.a ../contrib/zlib-install/lib/libz.a /vol0003/rccs-
sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-r
hel8-a64fx/fj-4.10.0/boost-1.83.0-fpdkui6yha674j4vqmienjpxohh6fwrs/
lib/libboost_program_options-mt.a /vol0003/rccs-sdt/data/a01008/spa
ck-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.
0/boost-1.83.0-fpdkui6yha674j4vqmienjpxohh6fwrs/lib/libboost_filesy
stem-mt.a /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227
/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-fpdkui6yh
a674j4vqmienjpxohh6fwrs/lib/libboost_system-mt.a /vol0003/rccs-sdt/
data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8
-a64fx/fj-4.10.0/boost-1.83.0-fpdkui6yha674j4vqmienjpxohh6fwrs/lib/
libboost_graph-mt.a /vol0003/rccs-sdt/data/a01008/spack-all-test/en
v-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0
-fpdkui6yha674j4vqmienjpxohh6fwrs/lib/libboost_serialization-mt.a /
vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/
spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-fpdkui6yha674j4vqmie
njpxohh6fwrs/lib/libboost_iostreams-mt.a /vol0003/rccs-sdt/data/a01
008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/f
j-4.10.0/boost-1.83.0-fpdkui6yha674j4vqmienjpxohh6fwrs/lib/libboost
_regex-mt.a
376 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-metabat-2.15-kxbnbikmi2yh2t7o4yrm6zd4o5nvj5dy
/spack-build-kxbnbik'
377 [ 92%] Built target jgi_summarize_bam_contig_depths
...
379 [ 96%] Linking CXX executable metabat1
380 cd /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-met
abat-2.15-kxbnbikmi2yh2t7o4yrm6zd4o5nvj5dy/spack-build-kxbnbik/src
&& /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/
opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv
7kbp6bugdcjc5ph6/bin/cmake -E cmake_link_script CMakeFiles/metabat1
.dir/link.txt --verbose=1
381 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/lib
/spack/env/fj/case-insensitive/FCC -fopenmp -O3 -DNDEBUG CMakeFile
s/metabat1.dir/metabat1.cpp.o -o metabat1 -Wl,-rpath,:::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::: ../contrib/zlib-install
/lib/libz.a /vol0003/rccs-sdt/data/a01008/spack-all-test/env-202402
27/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-fpdkui6
yha674j4vqmienjpxohh6fwrs/lib/libboost_program_options-mt.a /vol000
3/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/
linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-fpdkui6yha674j4vqmienjpxoh
h6fwrs/lib/libboost_filesystem-mt.a /vol0003/rccs-sdt/data/a01008/s
pack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.1
0.0/boost-1.83.0-fpdkui6yha674j4vqmienjpxohh6fwrs/lib/libboost_syst
em-mt.a /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/s
pack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-fpdkui6yha6
74j4vqmienjpxohh6fwrs/lib/libboost_graph-mt.a /vol0003/rccs-sdt/dat
a/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a6
4fx/fj-4.10.0/boost-1.83.0-fpdkui6yha674j4vqmienjpxohh6fwrs/lib/lib
boost_serialization-mt.a /vol0003/rccs-sdt/data/a01008/spack-all-te
st/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1
.83.0-fpdkui6yha674j4vqmienjpxohh6fwrs/lib/libboost_iostreams-mt.a
/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt
/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-fpdkui6yha674j4vqmi
enjpxohh6fwrs/lib/libboost_regex-mt.a
382 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-metabat-2.15-kxbnbikmi2yh2t7o4yrm6zd4o5nvj5dy
/spack-build-kxbnbik'
383 [ 96%] Built target metabat1
384 make[1]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-metabat-2.15-kxbnbikmi2yh2t7o4yrm6zd4o5nvj5dy
/spack-build-kxbnbik'
>> 385 make: *** [Makefile:149: all] Error 2
See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-metabat-2.15-kxbnbikmi2yh2t7o4yrm6zd4o5nvj5dy/spack-build-out.txt
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