List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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metplus 5.1.0

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
>> 834 ../src/libbufr_4.so: undefined reference to `__f_ajstl'
>> 835 ../src/libbufr_4.so: undefined reference to `__f_llta'
>> 836 ../src/libbufr_4.so: undefined reference to `__jwe_iinf'
>> 837 ../src/libbufr_4.so: undefined reference to `__jwe_xdal'
>> 838 ../src/libbufr_4.so: undefined reference to `__jwe_xalc'
>> 839 ../src/libbufr_4.so: undefined reference to `__f_trans'
>> 840 ../src/libbufr_4.so: undefined reference to `__g_log'
>> 841 ../src/libbufr_4.so: undefined reference to `__g_adxi'
>> 842 ../src/libbufr_4.so: undefined reference to `__jwe_ipsf'
>> 843 ../src/libbufr_4.so: undefined reference to `__f_lgta'
>> 844 ../src/libbufr_4.so: undefined reference to `__f_llea'
>> 845 ../src/libbufr_4.so: undefined reference to `__f_trim'
>> 846 ../src/libbufr_4.so: undefined reference to `__jwe_isfm'
>> 847 ../src/libbufr_4.so: undefined reference to `__jwe_ilst'
>> 848 ../src/libbufr_4.so: undefined reference to `__f_ccomp'
>> 849 ../src/libbufr_4.so: undefined reference to `__f_ida4'
>> 850 ../src/libbufr_4.so: undefined reference to `__f_ajxj'
>> 851 ../src/libbufr_4.so: undefined reference to `__f_size'
>> 852 ../src/libbufr_4.so: undefined reference to `__f_ltm4'
>> 853 ../src/libbufr_4.so: undefined reference to `__jwe_iinq'
>> 854 ../src/libbufr_4.so: undefined reference to `__f_lgea'
>> 855 ../src/libbufr_4.so: undefined reference to `__g_arxi'
>> 856 ../src/libbufr_4.so: undefined reference to `__f_ishft'
>> 857 ../src/libbufr_4.so: undefined reference to `__f_scmov'
>> 858 ../src/libbufr_4.so: undefined reference to `__jwe_iocf'
>> 859 ../src/libbufr_4.so: undefined reference to `__f_ajstr'
860 [ 99%] Built target debufr
>> 861 clang-7: error: linker command failed with exit code 1 (use -v to s
ee invocation)
>> 862 make[2]: *** [utils/CMakeFiles/xbfmg.dir/build.make:101: utils/xbfm
g] Error 1
863 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-bufr-12.0.1-t35lgy2whc7piqja2dkrkmqg7acekj5b/
spack-build-t35lgy2'
>> 864 make[1]: *** [CMakeFiles/Makefile2:418: utils/CMakeFiles/xbfmg.dir/
all] Error 2
865 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-bufr-12.0.1-t35lgy2whc7piqja2dkrkmqg7acekj5b/
spack-build-t35lgy2'
866 [ 99%] Built target readbp
867 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-bufr-12.0.1-t35lgy2whc7piqja2dkrkmqg7acekj5b/
spack-build-t35lgy2'
868 [ 99%] Built target gettab
869 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-bufr-12.0.1-t35lgy2whc7piqja2dkrkmqg7acekj5b/
spack-build-t35lgy2'
870 [ 99%] Built target sinv
871 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-bufr-12.0.1-t35lgy2whc7piqja2dkrkmqg7acekj5b/
spack-build-t35lgy2'
872 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-bufr-12.0.1-t35lgy2whc7piqja2dkrkmqg7acekj5b/
spack-build-t35lgy2'
873 [ 99%] Built target cmpbqm
874 [ 99%] Built target readmp
875 make[1]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-bufr-12.0.1-t35lgy2whc7piqja2dkrkmqg7acekj5b/
spack-build-t35lgy2'
>> 876 make: *** [Makefile:149: all] Error 2

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-bufr-12.0.1-t35lgy2whc7piqja2dkrkmqg7acekj5b/spack-build-out.txt

==> Warning: Skipping build of met-11.1.0-kbvywgamt7jb6je4pts6iciwo6qrdvgj since bufr-12.0.1-t35lgy2whc7piqja2dkrkmqg7acekj5b failed
==> Warning: Skipping build of metplus-5.1.0-5xaso3rgdnab5nh4hwccrnlnqnumwuxj since met-11.1.0-kbvywgamt7jb6je4pts6iciwo6qrdvgj failed
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/hdf5-1.14.3-qxnacxgse3udxh7b6wscu6iz3vsyvu6a
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libunistring-1.1-z2viquc3scbkaqsvmebdltlkex4g3zxv
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libbsd-0.11.7-ovlcn2spf2nziz5itskfcmtdbqscyqii
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pyproject-metadata-0.7.1-fs3vme4uqputh5py6ykygic6maqw3tlh
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-tomli-2.0.1-jsxdxnw7umod72hqs44hg5bn5n6dc7ri
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-setuptools-68.0.0-umhokgnekqyzlgjhl6pifea67uvzwnge
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-typing-extensions-4.8.0-knpphsnzvlaujfp7d76yy3ezradxkd5z
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-wheel-0.41.2-uecnqi7ns7hm2wehm3fwrq4fyygklprs
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/openssh-9.5p1-wyv7tnktdkjotkyki336dwdsjkyoc757
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/c-blosc-1.21.5-66ynsnfbl2evrc6id523jcamtzvu2ugx
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libidn2-2.3.4-cws54xc6xf6dzygzoag7dpjsr6ryuj5y
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/expat-2.5.0-wuv6zzro2s4luf6r3x6zecsjv5ew2xnh
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-versioneer-0.29-7ely3ypn6gsl4b6q4yzfm6fzca3ecmfo
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-six-1.16.0-ztq6x5ahyilyk723qkmrff772hjcllpa
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-mpi4py-3.1.4-miqtuhixgmngjckfcpj7w3frwcrbbfx3
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-cython-0.29.36-samzl4hunnfirzddufylooccm35ucxki
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pytz-2023.3-7g3i5s3pnpmdspxhhfo2mestraecwsh6
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/netcdf-c-4.9.2-gnv35ekwuowxz4iyaik777xaxvno4pvm
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/git-2.42.0-dwkradysco77qa5hmcp5ciqvhb3sfcuu
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-python-dateutil-2.8.2-aj4jw5b3skcdcl37umot4ovqikyfjwjq
==> Installing py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw [50/60]
==> No binary for py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/c8/c8c6c72d4a9f831f328efb1312642a1cafafaa88981d9ab76368d50d07d93cbe.tar.gz
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch
==> py-numpy: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'/vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/bin/python3.10' '-m' 'pip' '-vvv' '--no-input' '--no-cache-dir' '--disable-pip-version-check' 'install' '--no-deps' '--ignore-installed' '--no-build-isolation' '--no-warn-script-location' '--no-index' '--prefix=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw' '--config-settings=builddir=build' '--config-settings=compile-args=-j16' '--config-settings=setup-args=-Dblas=fjlapackexsve' '--config-settings=setup-args=-Dlapack=fjlapackexsve' '.'

2 errors found in build log:
64
65 Library m found: YES
66 Found CMake: /usr/bin/cmake (3.20.2)
67 WARNING: CMake Toolchain: Failed to determine CMake compilers stat
e
68 Run-time dependency fjlapackexsve found: NO (tried pkgconfig and c
make)
69
>> 70 ../numpy/meson.build:169:4: ERROR: Problem encountered: No BLAS libr
ary detected! Install one, or use the `allow-noblas` build option (n
ote, this may be up to 100x slower for some linear algebra operation
s).
71
72 A full log can be found at /vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7
yw/spack-src/build/meson-logs/meson-log.txt
73 error: subprocess-exited-with-error
74
75 × Preparing metadata (pyproject.toml) did not run successfully.
76 │ exit code: 1
77 ╰─> See above for output.
78
79 note: This error originates from a subprocess, and is likely not a
problem with pip.
80 full command: /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-
a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/bin/py
thon3.10 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/s
pack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pip-23.1.2-e5mqkkojghz
4zpl6zboxzql3mko55ccd/lib/python3.10/site-packages/pip/_vendor/pypro
ject_hooks/_in_process/_in_process.py prepare_metadata_for_build_whe
el /data/rccs-sdt/a01008/tmpdir/tmpwektejmb
81 cwd: /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-
py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw/spack-src
82 Preparing metadata (pyproject.toml): finished with status 'error'
>> 83 error: metadata-generation-failed
84
85 × Encountered error while generating package metadata.
86 ╰─> See above for output.
87
88 note: This is an issue with the package mentioned above, not pip.
89 hint: See above for details.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw/spack-build-out.txt

==> Warning: Skipping build of py-bottleneck-1.3.7-lsiwlfri5p3ak2fli6cew25t5lovm2af since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of py-pandas-1.5.3-ktebclieg6ttamachbavm22wrxiqzijw since py-bottleneck-1.3.7-lsiwlfri5p3ak2fli6cew25t5lovm2af failed
==> Warning: Skipping build of py-xarray-2023.7.0-zagdgmyug6pyt3e56o2rfndc6ucqk4jb since py-pandas-1.5.3-ktebclieg6ttamachbavm22wrxiqzijw failed
==> Warning: Skipping build of py-numexpr-2.8.4-crtnbjyjucdyh4hottaagjcykbcssfha since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of py-netcdf4-1.6.2-w5itmxqxe5xectdtmsgw6iux5vxu23pd since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of py-cftime-1.0.3.4-gb76fa4o7efc6nrnkfa725nfu4hxgin5 since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Error: metplus-5.1.0-5xaso3rgdnab5nh4hwccrnlnqnumwuxj: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/netcdf-cxx4-4.3.1-j7jsqgxjtiobc3og5muv3e7uxuxr42aj
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-setuptools-scm-7.1.0-nkc2xtoife4i3z45cwahqlnfcxxq3ffy


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