List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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minc-toolkit 1.9.18.2

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external gettext-0.19.8.1-6jl23wn6jpwquhvqibpwhvia7vxsgrq3)
[+] /usr (external m4-1.4.18-craoyd3hmfdcanz7zxglna5yxcvdtoem)
[+] /usr (external curl-7.61.1-qsvgylcys5hkzdnl2pdh4blrprxlsp5m)
[+] /usr (external ncurses-6.1-a6lc7oq2dlgphtibbpp6x72mqgmscros)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /usr (external perl-5.26.3-rkgbbov2pluaat3kknhtag5ui3vltkqk)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/flex-2.6.3-udlfzibabfli2hc4lyhfxk7p5xd3pv4f
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-text-format-0.62-h2ucjz3mh4fcjcexggaut2rjuyo46v7m
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/bison-3.8.2-kviw7pt3aorzqonkoy2vxqd5nzod5xdv
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-getopt-tabular-0.3-xmchu6somuzoccy5mcb7zpdftaxfksjp
==> Installing perl-mni-perllib-develop-a6mcjwi7azrmalo5vwjb2755b7bae7xy [13/14]
==> No binary for perl-mni-perllib-develop-a6mcjwi7azrmalo5vwjb2755b7bae7xy found: installing from source
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/perl-mni-perllib/no-stdin.patch
==> perl-mni-perllib: Executing phase: 'configure'
==> perl-mni-perllib: Executing phase: 'build'
==> perl-mni-perllib: Executing phase: 'install'
==> perl-mni-perllib: Successfully installed perl-mni-perllib-develop-a6mcjwi7azrmalo5vwjb2755b7bae7xy
Stage: 13.52s. Configure: 7.70s. Build: 12.10s. Install: 20.71s. Post-install: 1.48s. Total: 56.46s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-mni-perllib-develop-a6mcjwi7azrmalo5vwjb2755b7bae7xy
==> Installing minc-toolkit-1.9.18.2-mkfxqiik3zpunwqocq5tjtyep4cweo3w [14/14]
==> No binary for minc-toolkit-1.9.18.2-mkfxqiik3zpunwqocq5tjtyep4cweo3w found: installing from source
==> No patches needed for minc-toolkit
==> minc-toolkit: Executing phase: 'cmake'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6/bin/cmake' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:STRING=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/minc-toolkit-1.9.18.2-mkfxqiik3zpunwqocq5tjtyep4cweo3w' '-DCMAKE_BUILD_TYPE:STRING=Release' '-DCMAKE_INTERPROCEDURAL_OPTIMIZATION:BOOL=OFF' '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON' '-DCMAKE_INSTALL_RPATH:STRING=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/minc-toolkit-1.9.18.2-mkfxqiik3zpunwqocq5tjtyep4cweo3w/lib;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/minc-toolkit-1.9.18.2-mkfxqiik3zpunwqocq5tjtyep4cweo3w/lib64;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3/lib' '-DCMAKE_PREFIX_PATH:STRING=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-mni-perllib-develop-a6mcjwi7azrmalo5vwjb2755b7bae7xy;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-text-format-0.62-h2ucjz3mh4fcjcexggaut2rjuyo46v7m;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-getopt-tabular-0.3-xmchu6somuzoccy5mcb7zpdftaxfksjp;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/flex-2.6.3-udlfzibabfli2hc4lyhfxk7p5xd3pv4f;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3;/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/bison-3.8.2-kviw7pt3aorzqonkoy2vxqd5nzod5xdv' '-DMT_BUILD_SHARED_LIBS:BOOL=ON' '-DMT_BUILD_VISUAL_TOOLS:BOOL=OFF' '-DMT_BUILD_ANTS=OFF' '-DMT_BUILD_C3D=OFF' '-DMT_BUILD_ELASTIX=OFF' '/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-minc-toolkit-1.9.18.2-mkfxqiik3zpunwqocq5tjtyep4cweo3w/spack-src'

1 error found in build log:
26 policies are deprecated and that a policy should be set to OLD onl
y under
27 specific short-term circumstances. Projects should be ported to t
he NEW
28 behavior and not rely on setting a policy to OLD.
29
30
31 -- Found Perl: /usr/bin/perl (found version "5.26.3")
>> 32 CMake Error at cmake-modules/DownloadPackage.cmake:4 (file):
33 file DOWNLOAD cannot compute hash on failed download
34
35 status: [22;"HTTP response code said error"]
36 Call Stack (most recent call first):
37 cmake-modules/BuildZLIB.cmake:56 (GET_PACKAGE)
38 CMakeLists.txt:180 (build_zlib)

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-minc-toolkit-1.9.18.2-mkfxqiik3zpunwqocq5tjtyep4cweo3w/spack-build-out.txt


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