Failed Reason

Failed to install dependency package :
------------------------------------------------
==> randfold: Executing phase: 'edit'
==> randfold: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16'

2 errors found in build log:
4 gcc -c energy_par.c
5 gcc -c params.c
6 gcc -c fold.c
7 gcc -c fold_vars.c
8 gcc -c utils.c
9 gcc -O3 -I. -o randfold params.o energy_par.o fold.o fold_vars.o ut
ils.o randfold.c -lm -lsquid
>> 10 randfold.c:25:9: fatal error: squid.h: No such file or directory
11 #include<squid.h>
12 ^~~~~~~~~
13 compilation terminated.
>> 14 make: *** [Makefile:7: randfold] Error 1

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-randfold-2.0.1-7ulynkvkljm45cyx42fyz3cpzst7jxqd/spack-build-out.txt

==> Warning: Skipping build of mirdeep2-0.0.8-y76vy2wrbrxizaogfs4o3vkdilowqktf since randfold-2.0.1-7ulynkvkljm45cyx42fyz3cpzst7jxqd failed
==> Installing viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd [17/19]
==> No binary for viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/b8/b85544650ee316743173ec9b30497cc4c559f1bfb8f66d16c563f780afd8c0c5.tar.gz
==> No patches needed for viennarna
==> viennarna: Executing phase: 'autoreconf'
==> viennarna: Executing phase: 'configure'
==> viennarna: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

16 errors found in build log:
250 checking for directory to install architecture dependent python2 t
hings in... ${exec_prefix}/lib64/python2.7/site-packages
251 checking for Python2 module extension... .so
252 checking for /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-
viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd/spack-src/interfa
ces/Python/Makefile.am... yes
253 checking for /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-
viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd/spack-src/interfa
ces/Python/RNA_wrap.cpp... yes
254 checking for /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-
viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd/spack-src/interfa
ces/Python/RNA.py... yes
255 checking for python3... /vol0004/apps/oss/spack-v0.19/opt/spack/li
nux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmdd
rb5sk/bin/python3
>> 256 checking for Python3 include path... <string>:1: DeprecationWarnin
g: The distutils package is deprecated and slated for removal in P
ython 3.12. Use setuptools or check PEP 632 for potential alternat
ives
>> 257 <string>:1: DeprecationWarning: The distutils.sysconfig module is
deprecated, use sysconfig instead
258 /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1
/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/include/python3.10
259 checking for /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a
64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/inclu
de/python3.10/Python.h... yes
260 checking for Python3 ldflags...
>> 261 checking for Python3 extension linker... <string>:1: DeprecationWa
rning: The distutils package is deprecated and slated for removal
in Python 3.12. Use setuptools or check PEP 632 for potential alte
rnatives
>> 262 <string>:1: DeprecationWarning: The distutils.sysconfig module is
deprecated, use sysconfig instead
263 /opt/FJSVxtclanga/tcsds-1.2.36/bin/fcc -shared -L/usr/lib64 -L/vol
0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/exp
at-2.4.8-lztkevt2hobbf7ykiwnuegynnoxqqvwe/lib -L/usr/lib64 -L/usr/
lib64 -L/usr/lib64 -L/usr/lib64 -L/usr/lib64 -L/usr/lib64 -L/vol0
004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/util
-linux-uuid-2.38.1-c27ksl6k3mrl7o7bldrosk2bne5xplaw/lib -L/usr/lib
64 -L/vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-
4.8.1/zlib-1.2.13-go4ye2sg72pcca4bgunmcseuzq6czbol/lib
>> 264 checking for directory to install Python3 scripts in... <string>:1
: DeprecationWarning: The distutils package is deprecated and slat
ed for removal in Python 3.12. Use setuptools or check PEP 632 for
potential alternatives
>> 265 <string>:1: DeprecationWarning: The distutils.sysconfig module is
deprecated, use sysconfig instead
266 ${prefix}/lib/python3.10/site-packages
>> 267 checking for directory to install architecture dependent python3 t
hings in... <string>:1: DeprecationWarning: The distutils package
is deprecated and slated for removal in Python 3.12. Use setuptool
s or check PEP 632 for potential alternatives
>> 268 <string>:1: DeprecationWarning: The distutils.sysconfig module is
deprecated, use sysconfig instead
269 ${exec_prefix}/lib/python3.10/site-packages
>> 270 checking for Python3 module extension... <string>:1: DeprecationWa
rning: The distutils package is deprecated and slated for removal
in Python 3.12. Use setuptools or check PEP 632 for potential alte
rnatives
>> 271 <string>:1: DeprecationWarning: The distutils.sysconfig module is
deprecated, use sysconfig instead
272 .cpython-310-aarch64-linux-gnu.so
273 checking for Python3 tag for cached compiled scripts... cpython-31
0
274 checking for Python3 extension of cached and optimized bytecode...
cpython-310.opt-1.pyc
275 checking for doxygen... no
276 checking for dot... /usr/bin/dot
277 checking for egrep... /usr/bin/egrep

...

1408 checking for a BSD-compatible install... /usr/bin/install -c
1409 checking whether build environment is sane... yes
1410 checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
1411 checking for gawk... gawk
1412 checking whether make sets $(MAKE)... yes
1413 checking whether make supports the include directive... yes (GNU s
tyle)
>> 1414 configure: error: source directory already configured; run "make d
istclean" there first
>> 1415 make[4]: *** [Makefile:609: config.status] Error 1
1416 make[4]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/s
pack-stage/spack-stage-viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfg
ivzfd/spack-src'
>> 1417 make[3]: *** [Makefile:919: /data/rccs-sdt/a01008/tmpdir/spack-sta
ge/spack-stage-viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd/sp
ack-src/aclocal.m4] Error 2
1418 make[3]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/s
pack-stage/spack-stage-viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfg
ivzfd/spack-src/src/bin'
>> 1419 make[2]: *** [Makefile:541: all-recursive] Error 1
1420 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/s
pack-stage/spack-stage-viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfg
ivzfd/spack-src/src'
>> 1421 make[1]: *** [Makefile:689: all-recursive] Error 1
1422 make[1]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/s
pack-stage/spack-stage-viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfg
ivzfd/spack-src'
>> 1423 make: *** [Makefile:580: all] Error 2

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-viennarna-2.5.0-6upvvlfuwvgthzwcp2zufxcfjfgivzfd/spack-build-out.txt

==> Installing perl-pdf-api2-2.044-ynhqhvgdf7na4dk2fgtkivll543mpkm3 [18/19]
==> No binary for perl-pdf-api2-2.044-ynhqhvgdf7na4dk2fgtkivll543mpkm3 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/b2/b2d15579e42723d8d7f9b72de86d0d35cde34f1eb7713456ba2ad35fb3cbea7e.tar.gz
==> No patches needed for perl-pdf-api2
==> perl-pdf-api2: Executing phase: 'configure'
==> perl-pdf-api2: Executing phase: 'build'
==> perl-pdf-api2: Executing phase: 'install'
==> perl-pdf-api2: Successfully installed perl-pdf-api2-2.044-ynhqhvgdf7na4dk2fgtkivll543mpkm3
Stage: 7.10s. Configure: 2.31s. Build: 7.40s. Install: 6.48s. Post-install: 2.79s. Total: 27.42s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-pdf-api2-2.044-ynhqhvgdf7na4dk2fgtkivll543mpkm3
==> Error: mirdeep2-0.0.8-y76vy2wrbrxizaogfs4o3vkdilowqktf: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).