Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
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Compiler | Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38 |
---|---|
Result | Dependency Error |
Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external perl-5.26.3-rkgbbov2pluaat3kknhtag5ui3vltkqk)
[+] /usr (external bzip2-1.0.6-r4iabrte3nd5eemcd5v5coc3kvsnoyzu)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cpio-2.14-zv5t46qws3fezomwukgcgdvknaydcdmw
[+] /usr (external freetype-2.9.1-cauabtwo5dqzdbkssgtqnfqanh6djcyx)
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /usr (external gnutls-3.6.16-zd75auy6lg2wyteuizlxhp6mt6d6jykt)
[+] /usr (external libpng-1.6.34-xtms7s6d3iod6ac4f3fps6a5ksxtwdpa)
[+] /usr (external pcre-8.42-z2f5efp237uulatdncggkwll6eduvzyg)
[+] /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk (external python-3.10.8-zcbuy6dnhwhmsrco46b6ayaywy4nrfcy)
[+] /usr (external curl-7.61.1-qsvgylcys5hkzdnl2pdh4blrprxlsp5m)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-file-which-1.27-zfe24n4d4qvrebywjdi7vzx3o672njx2
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-extutils-makemaker-7.70-7pqivh4n7zkj2q44i66b4bdohnowpxr7
==> Installing perl-list-moreutils-xs-0.430-eehm7tndewwjppp5cfd5pvko5kkkuk6h [14/32]
==> No binary for perl-list-moreutils-xs-0.430-eehm7tndewwjppp5cfd5pvko5kkkuk6h found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/e8/e8ce46d57c179eecd8758293e9400ff300aaf20fefe0a9d15b9fe2302b9cb242.tar.gz
==> No patches needed for perl-list-moreutils-xs
==> perl-list-moreutils-xs: Executing phase: 'configure'
==> Error: ProcessError: Command exited with status 2:
'/usr/bin/perl' 'Makefile.PL' 'INSTALL_BASE=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-list-moreutils-xs-0.430-eehm7tndewwjppp5cfd5pvko5kkkuk6h'
2 errors found in build log:
>> 4 Checking for cc... clang-7: error: unknown argument: '-fstack-protect
or-strong'
>> 5 clang-7: error: unknown argument: '-fstack-clash-protection'
6 Can't produce loadable XS module at inc/Config/AutoConf/LMU.pm line 7
3.
7
See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-perl-list-moreutils-xs-0.430-eehm7tndewwjppp5cfd5pvko5kkkuk6h/spack-build-out.txt
==> Warning: Skipping build of perl-list-moreutils-0.430-ctfzqorkamwm7eqlxjkbjx2m6o7g5uxz since perl-list-moreutils-xs-0.430-eehm7tndewwjppp5cfd5pvko5kkkuk6h failed
==> Warning: Skipping build of mlst-2.23.0-q535pquc2otj3hmdnwkvtrnn72kdnld6 since perl-list-moreutils-0.430-ctfzqorkamwm7eqlxjkbjx2m6o7g5uxz failed
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/any2fasta-0.4.2-o4keh2jdueb4f5ierwqlbfoxur7fokro
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-exporter-tiny-1.006002-kkoekjyarvzny2o5xwlynomiyzryfbdk
==> Installing perl-test-more-1.302183-pqcqj5gs57uikg5zllka4jmaq44vrbhb [17/32]
==> No binary for perl-test-more-1.302183-pqcqj5gs57uikg5zllka4jmaq44vrbhb found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/13/1356ec24c5ab3f7ad8327091ddc6ace164a27767be10325776bf9743360ab4f7.tar.gz
==> No patches needed for perl-test-more
==> perl-test-more: Executing phase: 'configure'
==> perl-test-more: Executing phase: 'build'
==> perl-test-more: Executing phase: 'install'
==> perl-test-more: Successfully installed perl-test-more-1.302183-pqcqj5gs57uikg5zllka4jmaq44vrbhb
Stage: 10.19s. Configure: 0.97s. Build: 7.67s. Install: 5.83s. Post-install: 1.87s. Total: 27.00s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-test-more-1.302183-pqcqj5gs57uikg5zllka4jmaq44vrbhb
==> Installing perl-json-4.10-3ihjwtpnq3yzqemuvo4aaurgnjqn2ubl [18/32]
==> No binary for perl-json-4.10-3ihjwtpnq3yzqemuvo4aaurgnjqn2ubl found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/df/df8b5143d9a7de99c47b55f1a170bd1f69f711935c186a6dc0ab56dd05758e35.tar.gz
==> No patches needed for perl-json
==> perl-json: Executing phase: 'configure'
==> perl-json: Executing phase: 'build'
==> perl-json: Executing phase: 'install'
==> perl-json: Successfully installed perl-json-4.10-3ihjwtpnq3yzqemuvo4aaurgnjqn2ubl
Stage: 3.29s. Configure: 0.78s. Build: 2.90s. Install: 0.86s. Post-install: 0.79s. Total: 9.06s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-json-4.10-3ihjwtpnq3yzqemuvo4aaurgnjqn2ubl
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-scalar-list-utils-1.63-4xsiebxpw2fcdvw4qxplcwrsm7xuy5vb
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libjpeg-turbo-3.0.0-isdeykvaxqsqvht7e4gy4u4and66oeo7
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/lmdb-0.9.31-z4qgelxgm6sfvlrskd7xq63zbxxhfnpv
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/parallel-20220522-i4i5ljbrgs7gxcr3ofvyrjkttynvlemt
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/lzo-2.10-rtnjn5365bl6kfim5eejzfdyomj55ndl
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
==> Installing perl-role-tiny-2.002004-erwjqjqxyaml4kjudilnggsdmgpj52dv [25/32]
==> No binary for perl-role-tiny-2.002004-erwjqjqxyaml4kjudilnggsdmgpj52dv found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/d7/d7bdee9e138a4f83aa52d0a981625644bda87ff16642dfa845dcb44d9a242b45.tar.gz
==> No patches needed for perl-role-tiny
==> perl-role-tiny: Executing phase: 'configure'
==> perl-role-tiny: Executing phase: 'build'
==> perl-role-tiny: Executing phase: 'install'
==> perl-role-tiny: Successfully installed perl-role-tiny-2.002004-erwjqjqxyaml4kjudilnggsdmgpj52dv
Stage: 2.38s. Configure: 0.85s. Build: 1.78s. Install: 1.42s. Post-install: 0.83s. Total: 7.89s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-role-tiny-2.002004-erwjqjqxyaml4kjudilnggsdmgpj52dv
==> Installing perl-carp-1.50-pz67fsdrdi6vvc2wn4h2qttf2k63tzul [26/32]
==> No binary for perl-carp-1.50-pz67fsdrdi6vvc2wn4h2qttf2k63tzul found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/f5/f5273b4e1a6d51b22996c48cb3a3cbc72fd456c4038f5c20b127e2d4bcbcebd9.tar.gz
==> No patches needed for perl-carp
==> perl-carp: Executing phase: 'configure'
==> perl-carp: Executing phase: 'build'
==> perl-carp: Executing phase: 'install'
==> perl-carp: Successfully installed perl-carp-1.50-pz67fsdrdi6vvc2wn4h2qttf2k63tzul
Stage: 2.35s. Configure: 1.47s. Build: 1.61s. Install: 0.81s. Post-install: 0.84s. Total: 7.85s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-carp-1.50-pz67fsdrdi6vvc2wn4h2qttf2k63tzul
==> Installing perl-sub-quote-2.006008-piptcfp5ngnx7mto7sa3cvjod6nsemhk [27/32]
==> No binary for perl-sub-quote-2.006008-piptcfp5ngnx7mto7sa3cvjod6nsemhk found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/94/94bebd500af55762e83ea2f2bc594d87af828072370c7110c60c238a800d15b2.tar.gz
==> No patches needed for perl-sub-quote
==> perl-sub-quote: Executing phase: 'configure'
==> perl-sub-quote: Executing phase: 'build'
==> perl-sub-quote: Executing phase: 'install'
==> perl-sub-quote: Successfully installed perl-sub-quote-2.006008-piptcfp5ngnx7mto7sa3cvjod6nsemhk
Stage: 2.13s. Configure: 1.02s. Build: 1.31s. Install: 0.70s. Post-install: 0.89s. Total: 6.66s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-sub-quote-2.006008-piptcfp5ngnx7mto7sa3cvjod6nsemhk
==> Installing blast-plus-2.14.1-rcjnudj7aipxtfxbmz4ne42qz4vbdyj5 [28/32]
==> No binary for blast-plus-2.14.1-rcjnudj7aipxtfxbmz4ne42qz4vbdyj5 found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/71/712c2dbdf0fb13cc1c2d4f4ef5dd1ce4b06c3b57e96dfea8f23e6e99f5b1650e.tar.gz
==> No patches needed for blast-plus
==> blast-plus: Executing phase: 'autoreconf'
==> blast-plus: Executing phase: 'configure'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-blast-plus-2.14.1-rcjnudj7aipxtfxbmz4ne42qz4vbdyj5/spack-src/c++/configure' '--prefix=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/blast-plus-2.14.1-rcjnudj7aipxtfxbmz4ne42qz4vbdyj5' '--with-bin-release' '--without-debug' '--with-mt' '--without-boost' '--with-dll' '--without-static' '--without-static-exe' '--with-jpeg=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libjpeg-turbo-3.0.0-isdeykvaxqsqvht7e4gy4u4and66oeo7' '--with-png=/usr' '--with-freetype=/usr' '--without-hdf5' '--with-z=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3' '--with-bz2=/usr' '--with-lzo=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/lzo-2.10-rtnjn5365bl6kfim5eejzfdyomj55ndl' '--with-gnutls=/usr' '--without-openssl' '--with-pcre=/usr' '--with-python=/vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk' '--with-perl=/usr'
1 error found in build log:
69 checking whether /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20
240227/spack/lib/spack/env/fj/fcc has an option to discard unneeded
shared libraries... -Wl,--as-needed
70 checking whether /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20
240227/spack/lib/spack/env/fj/fcc has an option to link in whole st
atic archives... -Wl,--whole-archive
71 checking whether _LIBCPP_VERSION is declared... no
72 checking how to enable modern C++ features in /vol0003/rccs-sdt/data
/a01008/spack-all-test/env-20240227/spack/lib/spack/env/fj/case-inse
nsitive/FCC ... -std=gnu++17
73 checking how to enable modern C features in /vol0003/rccs-sdt/data/a
01008/spack-all-test/env-20240227/spack/lib/spack/env/fj/fcc ... -st
d=gnu17 -fgnu89-inline
74 checking for dpkg-architecture... no
>> 75 configure: error: Unable to find static libstdc++ requested by --wit
h-bin-release.
See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-blast-plus-2.14.1-rcjnudj7aipxtfxbmz4ne42qz4vbdyj5/spack-build-out.txt
==> Installing perl-class-method-modifiers-2.15-qk5433d6ugzsg2ktndfjzca5qdik7vkq [29/32]
==> No binary for perl-class-method-modifiers-2.15-qk5433d6ugzsg2ktndfjzca5qdik7vkq found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/65/65cd85bfe475d066e9186f7a8cc636070985b30b0ebb1cde8681cf062c2e15fc.tar.gz
==> No patches needed for perl-class-method-modifiers
==> perl-class-method-modifiers: Executing phase: 'configure'
==> perl-class-method-modifiers: Executing phase: 'build'
==> perl-class-method-modifiers: Executing phase: 'install'
==> perl-class-method-modifiers: Successfully installed perl-class-method-modifiers-2.15-qk5433d6ugzsg2ktndfjzca5qdik7vkq
Stage: 2.68s. Configure: 1.35s. Build: 1.35s. Install: 0.79s. Post-install: 0.98s. Total: 7.92s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-class-method-modifiers-2.15-qk5433d6ugzsg2ktndfjzca5qdik7vkq
==> Installing perl-moo-2.005005-zxzioubnuauhv2q7dyderlx25c43v5bu [30/32]
==> No binary for perl-moo-2.005005-zxzioubnuauhv2q7dyderlx25c43v5bu found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/fb/fb5a2952649faed07373f220b78004a9c6aba387739133740c1770e9b1f4b108.tar.gz
==> No patches needed for perl-moo
==> perl-moo: Executing phase: 'configure'
==> perl-moo: Executing phase: 'build'
==> perl-moo: Executing phase: 'install'
==> perl-moo: Successfully installed perl-moo-2.005005-zxzioubnuauhv2q7dyderlx25c43v5bu
Stage: 4.69s. Configure: 1.12s. Build: 1.77s. Install: 1.20s. Post-install: 1.19s. Total: 10.91s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/perl-moo-2.005005-zxzioubnuauhv2q7dyderlx25c43v5bu
==> Error: mlst-2.23.0-q535pquc2otj3hmdnwkvtrnn72kdnld6: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).