List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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mosesdecoder 4.0

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
0240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gcc-9.5.0-qw
ugj2y2w4vfcws4nflwoilnaabw3yo3/aarch64-unknown-linux-gnu/bin/ -B
/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/
opt/spack/linux-rhel8-a64fx/fj-4.10.0/gcc-9.5.0-qwugj2y2w4vfcws4
nflwoilnaabw3yo3/aarch64-unknown-linux-gnu/lib/ -isystem /vol000
3/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spa
ck/linux-rhel8-a64fx/fj-4.10.0/gcc-9.5.0-qwugj2y2w4vfcws4nflwoil
naabw3yo3/aarch64-unknown-linux-gnu/include -isystem /vol0003/rc
cs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/l
inux-rhel8-a64fx/fj-4.10.0/gcc-9.5.0-qwugj2y2w4vfcws4nflwoilnaab
w3yo3/aarch64-unknown-linux-gnu/sys-include -fchecking=1 -c -D
HAVE_CONFIG_H -O2 -g -fchecking=1 -I. -I/data/rccs-sdt/a01008/t
mpdir/spack-stage/spack-stage-gcc-9.5.0-qwugj2y2w4vfcws4nflwoiln
aabw3yo3/spack-src/libiberty/../include -W -Wall -Wwrite-string
s -Wc++-compat -Wstrict-prototypes -Wshadow=local -pedantic -D_
GNU_SOURCE /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-
gcc-9.5.0-qwugj2y2w4vfcws4nflwoilnaabw3yo3/spack-src/libiberty/d
-demangle.c -o d-demangle.o
568222 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gcc-9.5.0-q
wugj2y2w4vfcws4nflwoilnaabw3yo3/spack-src/libiberty/fibheap.c: I
n function 'fibheap_replace_key_data':
>> 568223 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gcc-9.5.0-q
wugj2y2w4vfcws4nflwoilnaabw3yo3/spack-src/libiberty/fibheap.c:38
:24: error: 'LONG_MIN' undeclared (first use in this function)
568224 38 | #define FIBHEAPKEY_MIN LONG_MIN
568225 | ^~~~~~~~
568226 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gcc-9.5.0-q
wugj2y2w4vfcws4nflwoilnaabw3yo3/spack-src/libiberty/fibheap.c:22
0:30: note: in expansion of macro 'FIBHEAPKEY_MIN'
568227 220 | if (okey == key && okey != FIBHEAPKEY_MIN)
568228 | ^~~~~~~~~~~~~~
568229 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gcc-9.5.0-q
wugj2y2w4vfcws4nflwoilnaabw3yo3/spack-src/libiberty/fibheap.c:36
:1: note: 'LONG_MIN' is defined in header '<limits.h>'; did you
forget to '#include <limits.h>'?

...

568234 38 | #define FIBHEAPKEY_MIN LONG_MIN
568235 | ^~~~~~~~
568236 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gcc-9.5.0-q
wugj2y2w4vfcws4nflwoilnaabw3yo3/spack-src/libiberty/fibheap.c:22
0:30: note: in expansion of macro 'FIBHEAPKEY_MIN'
568237 220 | if (okey == key && okey != FIBHEAPKEY_MIN)
568238 | ^~~~~~~~~~~~~~
568239 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gcc-9.5.0-q
wugj2y2w4vfcws4nflwoilnaabw3yo3/spack-src/libiberty/fibheap.c: I
n function 'fibheap_delete_node':
>> 568240 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gcc-9.5.0-q
wugj2y2w4vfcws4nflwoilnaabw3yo3/spack-src/libiberty/fibheap.c:38
:24: error: 'LONG_MIN' undeclared (first use in this function)
568241 38 | #define FIBHEAPKEY_MIN LONG_MIN
568242 | ^~~~~~~~
568243 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gcc-9.5.0-q
wugj2y2w4vfcws4nflwoilnaabw3yo3/spack-src/libiberty/fibheap.c:26
1:36: note: in expansion of macro 'FIBHEAPKEY_MIN'
568244 261 | fibheap_replace_key (heap, node, FIBHEAPKEY_MIN);
568245 | ^~~~~~~~~~~~~~
568246 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gcc-9.5.0-q
wugj2y2w4vfcws4nflwoilnaabw3yo3/spack-src/libiberty/fibheap.c:38
:24: note: 'LONG_MIN' is defined in header '<limits.h>'; did you
forget to '#include <limits.h>'?
568247 38 | #define FIBHEAPKEY_MIN LONG_MIN
568248 | ^~~~~~~~
568249 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gcc-9.5.0-q
wugj2y2w4vfcws4nflwoilnaabw3yo3/spack-src/libiberty/fibheap.c:26
1:36: note: in expansion of macro 'FIBHEAPKEY_MIN'
568250 261 | fibheap_replace_key (heap, node, FIBHEAPKEY_MIN);
568251 | ^~~~~~~~~~~~~~
>> 568252 make[3]: *** [Makefile:752: fibheap.o] Error 1
568253 make[3]: *** Waiting for unfinished jobs....
568254 [WARN] xos LPG 2003 - Failed to map HugeTLBfs for data/bss: Layo
ut problem with segments 0 and 1:
568255 Segments would overlap.
568256 [WARN] xos LPG 2003 - Failed to map HugeTLBfs for data/bss: Layo
ut problem with segments 0 and 1:
568257 Segments would overlap.
568258 [WARN] xos LPG 2003 - Failed to map HugeTLBfs for data/bss: Layo
ut problem with segments 0 and 1:

...

568316 checking for grep that handles long lines and -e... /usr/bin/gre
p
568317 checking for egrep... /usr/bin/grep -E
568318 checking for ANSI C header files... yes
568319 checking for sys/types.h... yes
568320 checking for sys/stat.h... yes
568321 checking for stdlib.h... make[3]: Leaving directory '/vol0003/rc
cs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-gcc-9.5.0-qwug
j2y2w4vfcws4nflwoilnaabw3yo3/spack-src/spack-build/libiberty'
>> 568322 make[2]: *** [Makefile:11281: all-stage3-libiberty] Error 2
568323 make[2]: *** Waiting for unfinished jobs....
568324 yes
568325 checking for string.h... yes
568326 checking for memory.h... yes
568327 checking for strings.h... yes
568328 checking for inttypes.h... yes

...

568438 configure: creating ./config.status
568439 config.status: creating Makefile
568440 config.status: creating config.h
568441 config.status: executing depdir commands
568442 mkdir -p -- .deps
568443 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir
/spack-stage/spack-stage-gcc-9.5.0-qwugj2y2w4vfcws4nflwoilnaabw3
yo3/spack-src/spack-build'
>> 568444 make[1]: *** [Makefile:23080: stage3-bubble] Error 2
568445 make[1]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir
/spack-stage/spack-stage-gcc-9.5.0-qwugj2y2w4vfcws4nflwoilnaabw3
yo3/spack-src/spack-build'
>> 568446 make: *** [Makefile:994: all] Error 2

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-gcc-9.5.0-qwugj2y2w4vfcws4nflwoilnaabw3yo3/spack-build-out.txt

==> Warning: Skipping build of mosesdecoder-4.0-l3qwx4s53rd6xpvpc7yapd7nmmtemrav since gcc-9.5.0-qwugj2y2w4vfcws4nflwoilnaabw3yo3 failed
==> Installing scons-4.5.2-f67crievadlnk6ynxh4x2ku2o4y6irup [45/50]
==> No binary for scons-4.5.2-f67crievadlnk6ynxh4x2ku2o4y6irup found: installing from source
The text leading up to this was:
--------------------------
|diff -u -r -N a/engine/SCons/Tool/__init__.py b/engine/SCons/Tool/__init__.py
|--- a/engine/SCons/Tool/__init__.py 2020-07-21 11:39:14.000000000 +0900
|+++ b/engine/SCons/Tool/__init__.py 2020-07-21 16:30:54.000000000 +0900
--------------------------
File to patch:
Skip this patch? [y]
2 out of 2 hunks ignored
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/81/813360b2bce476bc9cc12a0f3a22d46ce520796b352557202cb07d3e402f5458.tar.gz
==> Patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/scons/fjcompiler.patch failed.
==> Error: ProcessError: Command exited with status 1:
'/usr/bin/patch' '-s' '-p' '1' '-i' '/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/scons/fjcompiler.patch' '-d' '.'
==> Warning: Skipping build of serf-1.3.10-nwigfznuqdfgwxztbknujqy4xmv47krf since scons-4.5.2-f67crievadlnk6ynxh4x2ku2o4y6irup failed
==> Warning: Skipping build of subversion-1.14.2-xz6wtqm6uglcqrpwd2vhtw5zvxdahlhc since serf-1.3.10-nwigfznuqdfgwxztbknujqy4xmv47krf failed
==> Installing apr-util-1.6.3-vu52wig4eozswo2mpyla6opgidto7iws [46/50]
==> No binary for apr-util-1.6.3-vu52wig4eozswo2mpyla6opgidto7iws found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/2b/2b74d8932703826862ca305b094eef2983c27b39d5c9414442e9976a9acf1983.tar.gz
==> No patches needed for apr-util
==> apr-util: Executing phase: 'autoreconf'
==> apr-util: Executing phase: 'configure'
==> apr-util: Executing phase: 'build'
==> apr-util: Executing phase: 'install'
==> apr-util: Successfully installed apr-util-1.6.3-vu52wig4eozswo2mpyla6opgidto7iws
Stage: 7.95s. Autoreconf: 12.16s. Configure: 46.24s. Build: 1m 43.14s. Install: 5.78s. Post-install: 1.49s. Total: 3m 2.37s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/apr-util-1.6.3-vu52wig4eozswo2mpyla6opgidto7iws
==> Error: mosesdecoder-4.0-l3qwx4s53rd6xpvpc7yapd7nmmtemrav: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/git-2.42.0-dwkradysco77qa5hmcp5ciqvhb3sfcuu


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