mothur 1.48.0
Compiler |
Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38 |
Result |
Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external bzip2-1.0.6-r4iabrte3nd5eemcd5v5coc3kvsnoyzu)
[+] /usr (external xz-5.2.4-l5cq5xund4a2b3ikazvehpmbiao6srbv)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zstd-1.5.5-o7dcxyae4kjgruht44yuloa27ddisxfe
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /usr (external readline-7.0-e42rjj4i2akf22cltht7kf2fuxvhok62)
==> Installing usearch-11.0.667-i3k4ct2obj5y6ipj53fcmerjpyy4bv5w [7/15]
==> No binary for usearch-11.0.667-i3k4ct2obj5y6ipj53fcmerjpyy4bv5w found: installing from source
==> Error: FetchError: Manual download is required for usearch. Refer to https://www.drive5.com/usearch/ for download instructions.
==> Warning: Skipping build of mothur-1.48.0-w3rql4ouh6fufdzvbplgor2ph57pqzyh since usearch-11.0.667-i3k4ct2obj5y6ipj53fcmerjpyy4bv5w failed
[+] /usr (external autoconf-2.69-titfazaulrbnqxmahzxzof53lmsnabip)
[+] /usr (external automake-1.16.1-fryterkxezzfuo7itm4kijqfnazo5uk4)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /usr (external libtool-2.4.6-c63win5txkc7eap5ppbbjjoaqyj5i6wx)
[+] /usr (external m4-1.4.18-craoyd3hmfdcanz7zxglna5yxcvdtoem)
==> Installing boost-1.83.0-tcfegwp3j54gc22uu34qz7d63ajcmypq [13/15]
==> No binary for boost-1.83.0-tcfegwp3j54gc22uu34qz7d63ajcmypq found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/64/6478edfe2f3305127cffe8caf73ea0176c53769f4bf1585be237eb30798c3b8e.tar.bz2
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis-1.77.patch
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/boost/bootstrap-compiler.patch
==> Ran patch() for boost
==> boost: Executing phase: 'install'
==> boost: Successfully installed boost-1.83.0-tcfegwp3j54gc22uu34qz7d63ajcmypq
Stage: 31m 49.93s. Install: 22m 7.70s. Post-install: 6m 46.63s. Total: 1h 47.18s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-tcfegwp3j54gc22uu34qz7d63ajcmypq
==> Installing vsearch-2.22.1-25zmmvtnbcszbbpo2prwkm7oskrnxvar [14/15]
==> No binary for vsearch-2.22.1-25zmmvtnbcszbbpo2prwkm7oskrnxvar found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/c6/c62bf69e7cc3d011a12e3b522ba8c0c91fb90deea782359e9569677d0c991778.tar.gz
==> No patches needed for vsearch
==> vsearch: Executing phase: 'autoreconf'
==> vsearch: Executing phase: 'configure'
==> vsearch: Executing phase: 'build'
==> vsearch: Executing phase: 'install'
==> vsearch: Successfully installed vsearch-2.22.1-25zmmvtnbcszbbpo2prwkm7oskrnxvar
Stage: 4.76s. Autoreconf: 11.44s. Configure: 6m 21.43s. Build: 2m 33.33s. Install: 1.25s. Post-install: 0.99s. Total: 9m 14.25s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/vsearch-2.22.1-25zmmvtnbcszbbpo2prwkm7oskrnxvar
==> Error: mothur-1.48.0-w3rql4ouh6fufdzvbplgor2ph57pqzyh: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
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