List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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mothur 1.48.0

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external bzip2-1.0.6-r4iabrte3nd5eemcd5v5coc3kvsnoyzu)
[+] /usr (external xz-5.2.4-l5cq5xund4a2b3ikazvehpmbiao6srbv)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zstd-1.5.5-o7dcxyae4kjgruht44yuloa27ddisxfe
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /usr (external readline-7.0-e42rjj4i2akf22cltht7kf2fuxvhok62)
==> Installing usearch-11.0.667-i3k4ct2obj5y6ipj53fcmerjpyy4bv5w [7/15]
==> No binary for usearch-11.0.667-i3k4ct2obj5y6ipj53fcmerjpyy4bv5w found: installing from source
==> Error: FetchError: Manual download is required for usearch. Refer to https://www.drive5.com/usearch/ for download instructions.
==> Warning: Skipping build of mothur-1.48.0-w3rql4ouh6fufdzvbplgor2ph57pqzyh since usearch-11.0.667-i3k4ct2obj5y6ipj53fcmerjpyy4bv5w failed
[+] /usr (external autoconf-2.69-titfazaulrbnqxmahzxzof53lmsnabip)
[+] /usr (external automake-1.16.1-fryterkxezzfuo7itm4kijqfnazo5uk4)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /usr (external libtool-2.4.6-c63win5txkc7eap5ppbbjjoaqyj5i6wx)
[+] /usr (external m4-1.4.18-craoyd3hmfdcanz7zxglna5yxcvdtoem)
==> Installing boost-1.83.0-tcfegwp3j54gc22uu34qz7d63ajcmypq [13/15]
==> No binary for boost-1.83.0-tcfegwp3j54gc22uu34qz7d63ajcmypq found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/64/6478edfe2f3305127cffe8caf73ea0176c53769f4bf1585be237eb30798c3b8e.tar.bz2
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/boost/fujitsu_version_analysis-1.77.patch
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/boost/bootstrap-compiler.patch
==> Ran patch() for boost
==> boost: Executing phase: 'install'
==> boost: Successfully installed boost-1.83.0-tcfegwp3j54gc22uu34qz7d63ajcmypq
Stage: 31m 49.93s. Install: 22m 7.70s. Post-install: 6m 46.63s. Total: 1h 47.18s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-tcfegwp3j54gc22uu34qz7d63ajcmypq
==> Installing vsearch-2.22.1-25zmmvtnbcszbbpo2prwkm7oskrnxvar [14/15]
==> No binary for vsearch-2.22.1-25zmmvtnbcszbbpo2prwkm7oskrnxvar found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/c6/c62bf69e7cc3d011a12e3b522ba8c0c91fb90deea782359e9569677d0c991778.tar.gz
==> No patches needed for vsearch
==> vsearch: Executing phase: 'autoreconf'
==> vsearch: Executing phase: 'configure'
==> vsearch: Executing phase: 'build'
==> vsearch: Executing phase: 'install'
==> vsearch: Successfully installed vsearch-2.22.1-25zmmvtnbcszbbpo2prwkm7oskrnxvar
Stage: 4.76s. Autoreconf: 11.44s. Configure: 6m 21.43s. Build: 2m 33.33s. Install: 1.25s. Post-install: 0.99s. Total: 9m 14.25s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/vsearch-2.22.1-25zmmvtnbcszbbpo2prwkm7oskrnxvar
==> Error: mothur-1.48.0-w3rql4ouh6fufdzvbplgor2ph57pqzyh: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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