List of Open Source Software which can be built on Fugaku

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 Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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mummer4 4.0.0rc1

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
[+] /usr (external gmp-6.1.2-bdn4t2jwhvr743frsbjwrvaavy5ytp3g)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libsigsegv-2.14-fn3bnxb7al7gn55exytmpwahs23yoofj
[+] /usr (external readline-7.0-e42rjj4i2akf22cltht7kf2fuxvhok62)
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /usr (external perl-5.26.3-rkgbbov2pluaat3kknhtag5ui3vltkqk)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/mpfr-4.2.0-xgnqg2zix5lb3bnfego7iurj4xxqijr7
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/sed-4.9-2qzuk77ra2kmmjjuro7ux3emoiv64k75
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gawk-5.2.2-ljx352hziu3rixqpofzwp4fxuqlx2qhm
==> Installing mummer4-4.0.0rc1-5jiaufiis377cscii5x6mhkv4foyqken [10/10]
==> No binary for mummer4-4.0.0rc1-5jiaufiis377cscii5x6mhkv4foyqken found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/85/85006adb2d6539c2f738c3e3bb14b58bb6f62cd6c6ca5ede884a87ae76e07d1d.tar.gz
==> No patches needed for mummer4
==> mummer4: Executing phase: 'autoreconf'
==> mummer4: Executing phase: 'configure'
==> mummer4: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

3 errors found in build log:
213 depbase=`echo src/tigr/annotate.o | sed 's|[^/]*$|.deps/&|;s|\.o$||
'`;\
214 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/lib
/spack/env/fj/case-insensitive/FCC -DHAVE_CONFIG_H -I. -I/data/rccs
-sdt/a01008/tmpdir/spack-stage/spack-stage-mummer4-4.0.0rc1-5jiaufi
is377cscii5x6mhkv4foyqken/spack-src -Wall -I/data/rccs-sdt/a01008/
tmpdir/spack-stage/spack-stage-mummer4-4.0.0rc1-5jiaufiis377cscii5x
6mhkv4foyqken/spack-src/include -std=c++11 -fopenmp -DNDEBUG -std=
c++0x -g -O2 -MT src/tigr/annotate.o -MD -MP -MF $depbase.Tpo -c -o
src/tigr/annotate.o src/tigr/annotate.cc &&\
215 mv -f $depbase.Tpo $depbase.Po
216 libtool: compile: /vol0003/rccs-sdt/data/a01008/spack-all-test/env
-20240227/spack/lib/spack/env/fj/case-insensitive/FCC -DHAVE_CONFIG
_H -I. -I/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-mumme
r4-4.0.0rc1-5jiaufiis377cscii5x6mhkv4foyqken/spack-src -Wall -I/dat
a/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-mummer4-4.0.0rc1-5
jiaufiis377cscii5x6mhkv4foyqken/spack-src/include -std=c++11 -fopen
mp -DNDEBUG -std=c++0x -g -O2 -MT src/essaMEM/sssort_compact.lo -MD
-MP -MF src/essaMEM/.deps/sssort_compact.Tpo -c src/essaMEM/sssort
_compact.cc -o src/essaMEM/sssort_compact.o >/dev/null 2>&1
217 libtool: compile: /vol0003/rccs-sdt/data/a01008/spack-all-test/env
-20240227/spack/lib/spack/env/fj/case-insensitive/FCC -DHAVE_CONFIG
_H -I. -I/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-mumme
r4-4.0.0rc1-5jiaufiis377cscii5x6mhkv4foyqken/spack-src -Wall -I/dat
a/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-mummer4-4.0.0rc1-5
jiaufiis377cscii5x6mhkv4foyqken/spack-src/include -std=c++11 -fopen
mp -DNDEBUG -std=c++0x -g -O2 -MT src/tigr/sw_align.lo -MD -MP -MF
src/tigr/.deps/sw_align.Tpo -c src/tigr/sw_align.cc -o src/tigr/sw_
align.o >/dev/null 2>&1
218 libtool: compile: /vol0003/rccs-sdt/data/a01008/spack-all-test/env
-20240227/spack/lib/spack/env/fj/case-insensitive/FCC -DHAVE_CONFIG
_H -I. -I/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-mumme
r4-4.0.0rc1-5jiaufiis377cscii5x6mhkv4foyqken/spack-src -Wall -I/dat
a/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-mummer4-4.0.0rc1-5
jiaufiis377cscii5x6mhkv4foyqken/spack-src/include -std=c++11 -fopen
mp -DNDEBUG -std=c++0x -g -O2 -MT src/tigr/mgaps.lo -MD -MP -MF src
/tigr/.deps/mgaps.Tpo -c src/tigr/mgaps.cc -o src/tigr/mgaps.o >/de
v/null 2>&1
>> 219 src/tigr/postnuc.cc:174:37: error: non-constant-expression cannot b
e narrowed from type 'signed char' to 'char' in initializer list [-
Wc++11-narrowing]
220 Alignments.push_back({ *Mp, CurrCp->dirB } );
221 ^~~~~~~~~~~~
222 src/tigr/postnuc.cc:174:37: note: insert an explicit cast to silenc
e this issue
223 Alignments.push_back({ *Mp, CurrCp->dirB } );
224 ^~~~~~~~~~~~
225 static_cast<char>( )
226 1 error generated.
>> 227 make[1]: *** [Makefile:1860: src/tigr/postnuc.lo] Error 1
228 make[1]: *** Waiting for unfinished jobs....
229 libtool: compile: /vol0003/rccs-sdt/data/a01008/spack-all-test/env
-20240227/spack/lib/spack/env/fj/case-insensitive/FCC -DHAVE_CONFIG
_H -I. -I/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-mumme
r4-4.0.0rc1-5jiaufiis377cscii5x6mhkv4foyqken/spack-src -Wall -I/dat
a/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-mummer4-4.0.0rc1-5
jiaufiis377cscii5x6mhkv4foyqken/spack-src/include -std=c++11 -fopen
mp -DNDEBUG -std=c++0x -g -O2 -MT src/umd/nucmer.lo -MD -MP -MF src
/umd/.deps/nucmer.Tpo -c src/umd/nucmer.cc -o src/umd/nucmer.o >/de
v/null 2>&1
230 libtool: compile: /vol0003/rccs-sdt/data/a01008/spack-all-test/env
-20240227/spack/lib/spack/env/fj/case-insensitive/FCC -DHAVE_CONFIG
_H -I. -I/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-mumme
r4-4.0.0rc1-5jiaufiis377cscii5x6mhkv4foyqken/spack-src -Wall -I/dat
a/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-mummer4-4.0.0rc1-5
jiaufiis377cscii5x6mhkv4foyqken/spack-src/include -std=c++11 -fopen
mp -DNDEBUG -std=c++0x -g -O2 -MT src/essaMEM/sparseSA.lo -MD -MP -
MF src/essaMEM/.deps/sparseSA.Tpo -c src/essaMEM/sparseSA.cpp -o sr
c/essaMEM/sparseSA.o >/dev/null 2>&1
231 make[1]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-mummer4-4.0.0rc1-5jiaufiis377cscii5x6mhkv4foy
qken/spack-src'
>> 232 make: *** [Makefile:1073: all] Error 2

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-mummer4-4.0.0rc1-5jiaufiis377cscii5x6mhkv4foyqken/spack-build-out.txt

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