List of Open Source Software which can be built on Fugaku
 |
Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
ncbi-vdb 3.0.2
| Compiler | Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38 |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
-DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__f
loat128=_Float128 -D__mod__=\"libs/ext/mbedtls\" -Darm64 -I/data/rc
cs-sdt/a01008/tmpdir/spack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo
4puhkkrdihykm6l5d2eiifz3k/spack-src/interfaces -I/data/rccs-sdt/a01
008/tmpdir/spack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdih
ykm6l5d2eiifz3k/spack-src/interfaces/os -I/data/rccs-sdt/a01008/tmp
dir/spack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d
2eiifz3k/spack-src/interfaces/ext -I/data/rccs-sdt/a01008/tmpdir/sp
ack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz
3k/spack-src/interfaces/os/linux -I/data/rccs-sdt/a01008/tmpdir/spa
ck-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3
k/spack-src/interfaces/os/unix -I/data/rccs-sdt/a01008/tmpdir/spack
-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/
spack-src/../ngs/ngs-sdk -I/data/rccs-sdt/a01008/tmpdir/spack-stage
/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-
src/interfaces/ext/mbedtls -O3 -DNDEBUG -std=c11 -fPIC -Wall -MD
-MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/threading.c.o -MF CM
akeFiles/mbedcrypto.dir/threading.c.o.d -o CMakeFiles/mbedcrypto.di
r/threading.c.o -c /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-s
tage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-src/libs
/ext/mbedtls/threading.c
544 In file included from /data/rccs-sdt/a01008/tmpdir/spack-stage/spac
k-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-src/l
ibs/align/writer-ref.c:29:
545 In file included from /data/rccs-sdt/a01008/tmpdir/spack-stage/spac
k-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-src/i
nterfaces/kfs/file.h:39:
546 In file included from /data/rccs-sdt/a01008/tmpdir/spack-stage/spac
k-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-src/i
nterfaces/kfs/file-v2.h:35:
>> 547 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-ncbi-vdb-3.0.2
-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-src/interfaces/kfc/refcount
.h:39:10: fatal error: 'atomic32.h' file not found
548 #include <atomic32.h>
549 ^~~~~~~~~~~~
550 1 error generated.
>> 551 make[2]: *** [libs/align/CMakeFiles/align-writer.dir/build.make:219
: libs/align/CMakeFiles/align-writer.dir/writer-ref.c.o] Error 1
552 make[2]: *** Waiting for unfinished jobs....
553 In file included from /data/rccs-sdt/a01008/tmpdir/spack-stage/spac
k-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-src/l
ibs/align/writer-reference.c:35:
554 In file included from /data/rccs-sdt/a01008/tmpdir/spack-stage/spac
k-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-src/i
nterfaces/kfs/file.h:39:
555 In file included from /data/rccs-sdt/a01008/tmpdir/spack-stage/spac
k-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-src/i
nterfaces/kfs/file-v2.h:35:
>> 556 /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-ncbi-vdb-3.0.2
-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-src/interfaces/kfc/refcount
.h:39:10: fatal error: 'atomic32.h' file not found
557 #include <atomic32.h>
558 ^~~~~~~~~~~~
559 /usr/bin/ar qc ../../../ilib/libmbedtls.a CMakeFiles/mbedtls.dir/de
bug.c.o CMakeFiles/mbedtls.dir/net_sockets.c.o CMakeFiles/mbedtls.d
ir/ssl_cache.c.o CMakeFiles/mbedtls.dir/ssl_ciphersuites.c.o CMakeF
iles/mbedtls.dir/ssl_cli.c.o CMakeFiles/mbedtls.dir/ssl_cookie.c.o
CMakeFiles/mbedtls.dir/ssl_msg.c.o CMakeFiles/mbedtls.dir/ssl_srv.c
.o CMakeFiles/mbedtls.dir/ssl_ticket.c.o CMakeFiles/mbedtls.dir/ssl
_tls.c.o CMakeFiles/mbedtls.dir/ssl_tls13_keys.c.o
560 1 error generated.
>> 561 make[2]: *** [libs/align/CMakeFiles/align-writer.dir/build.make:233
: libs/align/CMakeFiles/align-writer.dir/writer-reference.c.o] Erro
r 1
562 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz
3k/spack-build-k2l3pdo'
>> 563 make[1]: *** [CMakeFiles/Makefile2:710: libs/align/CMakeFiles/align
-writer.dir/all] Error 2
564 /usr/bin/ranlib ../../../ilib/libmbedtls.a
565 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz
3k/spack-build-k2l3pdo'
566 [ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir
/timing.c.o
567 cd /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-ncb
i-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-build-k2l3pdo/li
bs/ext/mbedtls && /vol0003/rccs-sdt/data/a01008/spack-all-test/env-
20240227/spack/lib/spack/env/fj/fcc -DHAVE_R128 -DHAVE_Z128 -DLINUX
-DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__f
loat128=_Float128 -D__mod__=\"libs/ext/mbedtls\" -Darm64 -I/data/rc
cs-sdt/a01008/tmpdir/spack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo
4puhkkrdihykm6l5d2eiifz3k/spack-src/interfaces -I/data/rccs-sdt/a01
008/tmpdir/spack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdih
ykm6l5d2eiifz3k/spack-src/interfaces/os -I/data/rccs-sdt/a01008/tmp
dir/spack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d
2eiifz3k/spack-src/interfaces/ext -I/data/rccs-sdt/a01008/tmpdir/sp
ack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz
3k/spack-src/interfaces/os/linux -I/data/rccs-sdt/a01008/tmpdir/spa
ck-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3
k/spack-src/interfaces/os/unix -I/data/rccs-sdt/a01008/tmpdir/spack
-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/
spack-src/../ngs/ngs-sdk -I/data/rccs-sdt/a01008/tmpdir/spack-stage
/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-
src/interfaces/ext/mbedtls -O3 -DNDEBUG -std=c11 -fPIC -Wall -MD
-MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/timing.c.o -MF CMake
Files/mbedcrypto.dir/timing.c.o.d -o CMakeFiles/mbedcrypto.dir/timi
ng.c.o -c /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-ncbi
-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-src/libs/ext/mbed
tls/timing.c
568 [ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir
/version.c.o
569 cd /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-ncb
i-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-build-k2l3pdo/li
bs/ext/mbedtls && /vol0003/rccs-sdt/data/a01008/spack-all-test/env-
20240227/spack/lib/spack/env/fj/fcc -DHAVE_R128 -DHAVE_Z128 -DLINUX
-DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__f
loat128=_Float128 -D__mod__=\"libs/ext/mbedtls\" -Darm64 -I/data/rc
cs-sdt/a01008/tmpdir/spack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo
4puhkkrdihykm6l5d2eiifz3k/spack-src/interfaces -I/data/rccs-sdt/a01
008/tmpdir/spack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdih
ykm6l5d2eiifz3k/spack-src/interfaces/os -I/data/rccs-sdt/a01008/tmp
dir/spack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d
2eiifz3k/spack-src/interfaces/ext -I/data/rccs-sdt/a01008/tmpdir/sp
ack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz
3k/spack-src/interfaces/os/linux -I/data/rccs-sdt/a01008/tmpdir/spa
ck-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3
k/spack-src/interfaces/os/unix -I/data/rccs-sdt/a01008/tmpdir/spack
-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/
spack-src/../ngs/ngs-sdk -I/data/rccs-sdt/a01008/tmpdir/spack-stage
/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-
src/interfaces/ext/mbedtls -O3 -DNDEBUG -std=c11 -fPIC -Wall -MD
-MT libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/version.c.o -MF CMak
eFiles/mbedcrypto.dir/version.c.o.d -o CMakeFiles/mbedcrypto.dir/ve
rsion.c.o -c /data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-n
cbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-src/libs/ext/m
bedtls/version.c
...
584 cd /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-ncb
i-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-build-k2l3pdo/li
bs/ext/zstd && /vol0003/rccs-sdt/data/a01008/spack-all-test/env-202
40227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussg
juqkqbxi5dcv7kbp6bugdcjc5ph6/bin/cmake -E cmake_link_script CMakeFi
les/zstd.dir/link.txt --verbose=1
585 /usr/bin/ar qc ../../../ilib/libzstd.a CMakeFiles/zstd.dir/zstd.c.o
586 /usr/bin/ranlib ../../../ilib/libzstd.a
587 make[2]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz
3k/spack-build-k2l3pdo'
588 [ 18%] Built target zstd
589 make[1]: Leaving directory '/vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz
3k/spack-build-k2l3pdo'
>> 590 make: *** [Makefile:149: all] Error 2
See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-ncbi-vdb-3.0.2-k2l3pdo4puhkkrdihykm6l5d2eiifz3k/spack-build-out.txt
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