List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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nf-core-tools 2.7.2

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> py-exceptiongroup: Executing phase: 'install'
==> py-exceptiongroup: Successfully installed py-exceptiongroup-1.1.1-vrjaar7lmifbjwcf7mr5ttraxic6hwfy
Stage: 1.13s. Install: 9.25s. Post-install: 2.84s. Total: 18.14s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-exceptiongroup-1.1.1-vrjaar7lmifbjwcf7mr5ttraxic6hwfy
==> Installing py-hatchling-1.18.0-f3tmndlbbzp2r6chr7srdugauqzdd6zf [139/171]
==> No binary for py-hatchling-1.18.0-f3tmndlbbzp2r6chr7srdugauqzdd6zf found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/50/50e99c3110ce0afc3f7bdbadff1c71c17758e476731c27607940cfa6686489ca.tar.gz
==> No patches needed for py-hatchling
==> py-hatchling: Executing phase: 'install'
==> py-hatchling: Successfully installed py-hatchling-1.18.0-f3tmndlbbzp2r6chr7srdugauqzdd6zf
Stage: 3.56s. Install: 20.58s. Post-install: 5.41s. Total: 35.83s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-hatchling-1.18.0-f3tmndlbbzp2r6chr7srdugauqzdd6zf
==> Installing py-galaxy-util-22.1.2-pmxsjplm57o46pka7xznct2foi3jcuas [140/171]
==> No binary for py-galaxy-util-22.1.2-pmxsjplm57o46pka7xznct2foi3jcuas found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/80/80257c94dc9122ebf80d643aa3962fe8beda23dbba8fc4820a0d2b720f479f98.tar.gz
==> No patches needed for py-galaxy-util
==> py-galaxy-util: Executing phase: 'install'
==> py-galaxy-util: Successfully installed py-galaxy-util-22.1.2-pmxsjplm57o46pka7xznct2foi3jcuas
Stage: 14.79s. Install: 40.04s. Post-install: 5.53s. Total: 1m 10.79s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-galaxy-util-22.1.2-pmxsjplm57o46pka7xznct2foi3jcuas
==> Installing py-hatch-vcs-0.3.0-vxlscyb4b2ktajiys7ttnml3tkiworsc [141/171]
==> No binary for py-hatch-vcs-0.3.0-vxlscyb4b2ktajiys7ttnml3tkiworsc found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/ce/cec5107cfce482c67f8bc96f18bbc320c9aa0d068180e14ad317bbee5a153fee.tar.gz
==> No patches needed for py-hatch-vcs
==> py-hatch-vcs: Executing phase: 'install'
==> py-hatch-vcs: Successfully installed py-hatch-vcs-0.3.0-vxlscyb4b2ktajiys7ttnml3tkiworsc
Stage: 1.87s. Install: 12.88s. Post-install: 3.20s. Total: 22.70s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-hatch-vcs-0.3.0-vxlscyb4b2ktajiys7ttnml3tkiworsc
==> Installing py-hatch-fancy-pypi-readme-23.1.0-4uzkpt5dlr32oxlldza36xfofpiujwz7 [142/171]
==> No binary for py-hatch-fancy-pypi-readme-23.1.0-4uzkpt5dlr32oxlldza36xfofpiujwz7 found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/b1/b1df44063094af1e8248ceacd47a92c9cf313d6b9823bf66af8a927c3960287d.tar.gz
==> No patches needed for py-hatch-fancy-pypi-readme
==> py-hatch-fancy-pypi-readme: Executing phase: 'install'
==> py-hatch-fancy-pypi-readme: Successfully installed py-hatch-fancy-pypi-readme-23.1.0-4uzkpt5dlr32oxlldza36xfofpiujwz7
Stage: 2.15s. Install: 9.19s. Post-install: 3.20s. Total: 19.84s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-hatch-fancy-pypi-readme-23.1.0-4uzkpt5dlr32oxlldza36xfofpiujwz7
==> Installing py-galaxy-containers-22.1.1-cgbeleejagtodaovwttks7adglapd7z3 [143/171]
==> No binary for py-galaxy-containers-22.1.1-cgbeleejagtodaovwttks7adglapd7z3 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/41/41e0003b18e580175d443cf21e9c2d2eb21a265c012164f7255cdb0c03a76334.tar.gz
==> No patches needed for py-galaxy-containers
==> py-galaxy-containers: Executing phase: 'install'
==> py-galaxy-containers: Successfully installed py-galaxy-containers-22.1.1-cgbeleejagtodaovwttks7adglapd7z3
Stage: 4.06s. Install: 29.55s. Post-install: 4.05s. Total: 47.26s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-galaxy-containers-22.1.1-cgbeleejagtodaovwttks7adglapd7z3
==> Installing py-filelock-3.12.4-e3tx6jgenrx53a7u6n45dl2x3tvhvfaz [144/171]
==> No binary for py-filelock-3.12.4-e3tx6jgenrx53a7u6n45dl2x3tvhvfaz found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/2e/2e6f249f1f3654291606e046b09f1fd5eac39b360664c27f5aad072012f8bcbd.tar.gz
==> No patches needed for py-filelock
==> py-filelock: Executing phase: 'install'
==> py-filelock: Successfully installed py-filelock-3.12.4-e3tx6jgenrx53a7u6n45dl2x3tvhvfaz
Stage: 1.18s. Install: 10.09s. Post-install: 9.43s. Total: 28.43s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-filelock-3.12.4-e3tx6jgenrx53a7u6n45dl2x3tvhvfaz
==> Installing py-platformdirs-2.5.2-ihwkp6idbr2vndgnu5ulqak3iahuje24 [145/171]
==> No binary for py-platformdirs-2.5.2-ihwkp6idbr2vndgnu5ulqak3iahuje24 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/58/58c8abb07dcb441e6ee4b11d8df0ac856038f944ab98b7be6b27b2a3c7feef19.tar.gz
==> No patches needed for py-platformdirs
==> py-platformdirs: Executing phase: 'install'
==> py-platformdirs: Successfully installed py-platformdirs-2.5.2-ihwkp6idbr2vndgnu5ulqak3iahuje24
Stage: 3.01s. Install: 12.16s. Post-install: 2.77s. Total: 29.35s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-platformdirs-2.5.2-ihwkp6idbr2vndgnu5ulqak3iahuje24
==> Installing py-iniconfig-2.0.0-kg2o52y7vfpfv27vnkkttkiekben62ut [146/171]
==> No binary for py-iniconfig-2.0.0-kg2o52y7vfpfv27vnkkttkiekben62ut found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/2d/2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3.tar.gz
==> No patches needed for py-iniconfig
==> py-iniconfig: Executing phase: 'install'
==> py-iniconfig: Successfully installed py-iniconfig-2.0.0-kg2o52y7vfpfv27vnkkttkiekben62ut
Stage: 0.93s. Install: 11.91s. Post-install: 2.42s. Total: 20.10s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-iniconfig-2.0.0-kg2o52y7vfpfv27vnkkttkiekben62ut
==> Installing py-attrs-23.1.0-o6tpqdqn3rjgugbbopw4ks3kd7us7xec [147/171]
==> No binary for py-attrs-23.1.0-o6tpqdqn3rjgugbbopw4ks3kd7us7xec found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/62/6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015.tar.gz
==> No patches needed for py-attrs
==> py-attrs: Executing phase: 'install'
==> py-attrs: Successfully installed py-attrs-23.1.0-o6tpqdqn3rjgugbbopw4ks3kd7us7xec
Stage: 3.61s. Install: 10.35s. Post-install: 2.82s. Total: 21.31s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-attrs-23.1.0-o6tpqdqn3rjgugbbopw4ks3kd7us7xec
==> Installing py-galaxy-tool-util-22.1.5-ma2eicpnuf5qzrmk6oclblzob7og5574 [148/171]
==> No binary for py-galaxy-tool-util-22.1.5-ma2eicpnuf5qzrmk6oclblzob7og5574 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/60/60e0372f16255c5c11ec5c49dff432ed3beb97123d026f463cf633bc605c0112.tar.gz
==> No patches needed for py-galaxy-tool-util
==> py-galaxy-tool-util: Executing phase: 'install'
==> py-galaxy-tool-util: Successfully installed py-galaxy-tool-util-22.1.5-ma2eicpnuf5qzrmk6oclblzob7og5574
Stage: 8.08s. Install: 54.51s. Post-install: 7.05s. Total: 1m 19.98s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-galaxy-tool-util-22.1.5-ma2eicpnuf5qzrmk6oclblzob7og5574
==> Installing py-virtualenv-20.17.1-ri2clepapwr7n4mjuk5wnx6yop7qsnuh [149/171]
==> No binary for py-virtualenv-20.17.1-ri2clepapwr7n4mjuk5wnx6yop7qsnuh found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/f8/f8b927684efc6f1cc206c9db297a570ab9ad0e51c16fa9e45487d36d1905c058.tar.gz
==> No patches needed for py-virtualenv
==> py-virtualenv: Executing phase: 'install'
==> py-virtualenv: Successfully installed py-virtualenv-20.17.1-ri2clepapwr7n4mjuk5wnx6yop7qsnuh
Stage: 11.07s. Install: 1m 54.02s. Post-install: 6.35s. Total: 2m 18.77s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-virtualenv-20.17.1-ri2clepapwr7n4mjuk5wnx6yop7qsnuh
==> Installing py-pytest-7.3.2-q6ynmsnhs3muhis7rcp7soh2sx3cgduk [150/171]
==> No binary for py-pytest-7.3.2-q6ynmsnhs3muhis7rcp7soh2sx3cgduk found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/ee/ee990a3cc55ba808b80795a79944756f315c67c12b56abd3ac993a7b8c17030b.tar.gz
==> No patches needed for py-pytest
==> py-pytest: Executing phase: 'install'
==> py-pytest: Successfully installed py-pytest-7.3.2-q6ynmsnhs3muhis7rcp7soh2sx3cgduk
Stage: 15.67s. Install: 28.82s. Post-install: 6.57s. Total: 1m 0.00s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pytest-7.3.2-q6ynmsnhs3muhis7rcp7soh2sx3cgduk
==> Installing py-cattrs-22.2.0-e4xotwj5xl4cajyvsbik4br4r2culwlg [151/171]
==> No binary for py-cattrs-22.2.0-e4xotwj5xl4cajyvsbik4br4r2culwlg found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/f0/f0eed5642399423cf656e7b66ce92cdc5b963ecafd041d1b24d136fdde7acf6d.tar.gz
==> No patches needed for py-cattrs
==> py-cattrs: Executing phase: 'install'
==> py-cattrs: Successfully installed py-cattrs-22.2.0-e4xotwj5xl4cajyvsbik4br4r2culwlg
Stage: 2.56s. Install: 19.78s. Post-install: 5.25s. Total: 37.91s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-cattrs-22.2.0-e4xotwj5xl4cajyvsbik4br4r2culwlg
==> Installing py-jsonschema-4.17.3-4tx33ukgekwxgkonjevcmvud3c6jmmwu [152/171]
==> No binary for py-jsonschema-4.17.3-4tx33ukgekwxgkonjevcmvud3c6jmmwu found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/0f/0f864437ab8b6076ba6707453ef8f98a6a0d512a80e93f8abdb676f737ecb60d.tar.gz
==> No patches needed for py-jsonschema
==> py-jsonschema: Executing phase: 'install'
==> py-jsonschema: Successfully installed py-jsonschema-4.17.3-4tx33ukgekwxgkonjevcmvud3c6jmmwu
Stage: 22.80s. Install: 12.36s. Post-install: 3.62s. Total: 51.63s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-jsonschema-4.17.3-4tx33ukgekwxgkonjevcmvud3c6jmmwu
==> Installing py-pre-commit-3.3.3-kdl64kczcqvpa76timy3ka62o7q3hjzi [153/171]
==> No binary for py-pre-commit-3.3.3-kdl64kczcqvpa76timy3ka62o7q3hjzi found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/a2/a2256f489cd913d575c145132ae196fe335da32d91a8294b7afe6622335dd023.tar.gz
==> No patches needed for py-pre-commit
==> py-pre-commit: Executing phase: 'install'
==> py-pre-commit: Successfully installed py-pre-commit-3.3.3-kdl64kczcqvpa76timy3ka62o7q3hjzi
Stage: 4.30s. Install: 22.10s. Post-install: 5.14s. Total: 41.32s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pre-commit-3.3.3-kdl64kczcqvpa76timy3ka62o7q3hjzi
==> Installing py-pytest-workflow-1.6.0-5pkn35r6hln5vsowo5aq7ahvidfonn5a [154/171]
==> No binary for py-pytest-workflow-1.6.0-5pkn35r6hln5vsowo5aq7ahvidfonn5a found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/8f/8fb9fb31a6132c783231afbbbb92941297a42713dcd459694b5efe4a13b8cba7.tar.gz
==> No patches needed for py-pytest-workflow
==> py-pytest-workflow: Executing phase: 'install'
==> py-pytest-workflow: Successfully installed py-pytest-workflow-1.6.0-5pkn35r6hln5vsowo5aq7ahvidfonn5a
Stage: 2.09s. Install: 13.33s. Post-install: 3.06s. Total: 27.99s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pytest-workflow-1.6.0-5pkn35r6hln5vsowo5aq7ahvidfonn5a
==> Installing py-yacman-0.8.4-77mwbrnecyqpfpyii7yiasm7tasowukm [155/171]
==> No binary for py-yacman-0.8.4-77mwbrnecyqpfpyii7yiasm7tasowukm found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/80/807972d7f9251f71401fc4ff6c01734ccdad1f92cefd1fd251336a2a094608bd.tar.gz
==> No patches needed for py-yacman
==> py-yacman: Executing phase: 'install'
==> py-yacman: Successfully installed py-yacman-0.8.4-77mwbrnecyqpfpyii7yiasm7tasowukm
Stage: 0.80s. Install: 10.45s. Post-install: 2.86s. Total: 19.46s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-yacman-0.8.4-77mwbrnecyqpfpyii7yiasm7tasowukm
==> Installing py-refgenconf-0.12.2-7g67gvmkfjp6x6vsuyw2rm65y7pek5hv [156/171]
==> No binary for py-refgenconf-0.12.2-7g67gvmkfjp6x6vsuyw2rm65y7pek5hv found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/6c/6c9f9ecd8b91b4f75a535cfbdbdfb136f2dc9e9864142d07aa0352c61cf0cf78.tar.gz
==> No patches needed for py-refgenconf
==> py-refgenconf: Executing phase: 'install'
==> py-refgenconf: Successfully installed py-refgenconf-0.12.2-7g67gvmkfjp6x6vsuyw2rm65y7pek5hv
Stage: 2.18s. Install: 13.98s. Post-install: 5.03s. Total: 31.85s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-refgenconf-0.12.2-7g67gvmkfjp6x6vsuyw2rm65y7pek5hv
==> Error: nf-core-tools-2.7.2-gmcakolwte66hpvqzqjuwlcg43z244g3: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).


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