Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
Compiler | Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38 |
---|---|
Result | Dependency Error |
Failed to install dependency package :
------------------------------------------------
==> No binary for llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/56/56b2f75fdaa95ad5e477a246d3f0d164964ab066b4619a01836ef08e475ec9d5.tar.gz
==> Ran patch() for llvm
==> llvm: Executing phase: 'cmake'
==> llvm: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 1:
'ninja' '-j16' '-v'
5 errors found in build log:
9869 ^
9870 <command line>:1:9: note: previous definition is here
9871 #define DEBUG_PREFIX "TARGET CUDA RTL"
9872 ^
9873 1 warning generated.
9874 [1714/2506] Linking CXX shared library /vol0003/rccs-sdt/data/a010
08/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2
c6f34cfvea2u/spack-build-sukibby/lib/libomptarget.rtl.aarch64.so.1
6
>> 9875 FAILED: /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-sta
ge-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibb
y/lib/libomptarget.rtl.aarch64.so.16
9876 : && /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-
llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/.
/bin/clang++ --target=aarch64-unknown-linux-gnu -fPIC -std=c++11 -
fPIC -fno-semantic-interposition -fvisibility-inlines-hidden -Werr
or=date-time -Werror=unguarded-availability-new -Wall -Wextra -Wno
-unused-parameter -Wwrite-strings -Wcast-qual -Wmissing-field-init
ializers -Wimplicit-fallthrough -Wcovered-switch-default -Wno-noex
cept-type -Wnon-virtual-dtor -Wdelete-non-virtual-dtor -Wsuggest-o
verride -Wno-comment -Wstring-conversion -Wmisleading-indentation
-Wctad-maybe-unsupported -fdiagnostics-color -ffunction-sections -
fdata-sections -Wall -Wcast-qual -Wformat-pedantic -Wimplicit-fall
through -Wsign-compare -Wno-enum-constexpr-conversion -Wno-extra -
Wno-pedantic -std=c++17 -O3 -DNDEBUG -Wl,-z,defs -Wl,-z,nodelete
-Wl,--gc-sections -shared -Wl,-soname,libomptarget.rtl.aarch64.s
o.16 -o /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-sta
ge-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibb
y/lib/libomptarget.rtl.aarch64.so.16 openmp/libomptarget/plugins/c
ommon/elf_common/CMakeFiles/elf_common.dir/elf_common.cpp.o openmp
/libomptarget/plugins/common/elf_common/CMakeFiles/elf_common.dir/
ELFSymbols.cpp.o openmp/libomptarget/plugins/aarch64/CMakeFiles/om
ptarget.rtl.aarch64.dir/vol0003/rccs-sdt/data/a01008/tmpdir/spack-
stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spa
ck-src/openmp/libomptarget/plugins/generic-elf-64bit/src/rtl.cpp.o
-Wl,-rpath,"\$ORIGIN:/vol0003/rccs-sdt/data/a01008/tmpdir/spack-
stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spa
ck-build-sukibby/runtimes/runtimes-bins/openmp/libomptarget/plugin
s/aarch64/..:/vol0003/rccs-sdt/data/a01008/spack-all-test/env-2024
0227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4n
sqgrityww4eqljits3svzi4wynus3/lib:" /usr/lib64/libffi.so -Wl,--v
ersion-script=/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spa
ck-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-src/op
enmp/libomptarget/plugins/aarch64/../exports /vol0003/rccs-sdt/da
ta/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb
6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLLVMObject.a /vol0
003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.
6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLLVM
IRReader.a /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack
-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-su
kibby/lib/libLLVMBitReader.a /vol0003/rccs-sdt/data/a01008/tmpdir
/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfve
a2u/spack-build-sukibby/lib/libLLVMAsmParser.a /vol0003/rccs-sdt/
data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcn
lb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLLVMCore.a /vol0
003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.
6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLLVM
Remarks.a /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-
stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-suk
ibby/lib/libLLVMBitstreamReader.a /vol0003/rccs-sdt/data/a01008/t
mpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f3
4cfvea2u/spack-build-sukibby/lib/libLLVMMCParser.a /vol0003/rccs-
sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibby
vhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLLVMMC.a /vo
l0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.
0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLL
VMDebugInfoCodeView.a /vol0003/rccs-sdt/data/a01008/tmpdir/spack-
stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spa
ck-build-sukibby/lib/libLLVMTextAPI.a /vol0003/rccs-sdt/data/a010
08/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2
c6f34cfvea2u/spack-build-sukibby/lib/libLLVMBinaryFormat.a /vol00
03/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.6
-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/libLLVMT
argetParser.a /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/sp
ack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build
-sukibby/lib/libLLVMSupport.a -lrt -ldl -lm /vol0003/rccs-sdt/
data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel
8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3/l
ib/libz.so /usr/lib64/libtinfo.so /vol0003/rccs-sdt/data/a01008/
tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f
34cfvea2u/spack-build-sukibby/lib/libLLVMDemangle.a && :
9877 /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-
16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/lib/li
bLLVMSupport.a(Process.cpp.o): In function `llvm::sys::Process::Sa
felyCloseFileDescriptor(int)':
>> 9878 /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-
16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-src/llvm/lib/Support
/Unix/Process.inc:246: undefined reference to `pthread_sigmask'
>> 9879 /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-llvm-
16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-src/llvm/lib/Support
/Unix/Process.inc:261: undefined reference to `pthread_sigmask'
>> 9880 clang-16: error: linker command failed with exit code 1 (use -v to
see invocation)
9881 [1738/2506] Building CXX object openmp/libomptarget/plugins-nextge
n/common/PluginInterface/CMakeFiles/PluginInterface.dir/JIT.cpp.o
9882 ninja: build stopped: subcommand failed.
>> 9883 FAILED: runtimes/runtimes-stamps/runtimes-build /vol0003/rccs-sdt/
data/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcn
lb6epwzx2c6f34cfvea2u/spack-build-sukibby/runtimes/runtimes-stamps
/runtimes-build
9884 cd /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-ll
vm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-sukibby/run
times/runtimes-bins && /vol0003/rccs-sdt/data/a01008/spack-all-tes
t/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3
.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6/bin/cmake --build .
9885 ninja: build stopped: subcommand failed.
See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u/spack-build-out.txt
==> Warning: Skipping build of mesa-23.0.3-wk6ddiinkpt5dnfqb26etpsxfjwqxmdi since llvm-16.0.6-sukibbyvhcnlb6epwzx2c6f34cfvea2u failed
==> Warning: Skipping build of osmesa-11.2.0-ghjgccmjtuqvt7iu4ushdijlp3vxj4di since mesa-23.0.3-wk6ddiinkpt5dnfqb26etpsxfjwqxmdi failed
==> Warning: Skipping build of paraview-5.9.1-ortygczaokwvwwam7acuquakqqjiamdd since osmesa-11.2.0-ghjgccmjtuqvt7iu4ushdijlp3vxj4di failed
==> Warning: Skipping build of of-catalyst-1806-bvh6ehjtv42n5c3a4hdjdxm5rkafausa since paraview-5.9.1-ortygczaokwvwwam7acuquakqqjiamdd failed
==> Warning: glew-2.2.0-5bakhvnspvmbtntqw6xkfepcoq6lga7j failed to install
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cgal-4.13-tx7ze34wwt5q4fpay5tpgzl3uxmjvi7h
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libsm-1.2.3-ql5dcoukjfwm4fv7fp4cuvvrcgfhmwo5
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libxext-1.3.3-uw36ft66btmhuje5wqpuvumdkjaliblr
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libxrender-0.9.10-q4gwr6md66izqxyvqzgmk5y5mzuyfgmk
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-mako-1.2.4-m2hng5c6l7fsrv733z3thbrafxfrtlxj
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/netcdf-c-4.9.2-gnv35ekwuowxz4iyaik777xaxvno4pvm
==> Installing openfoam-1806-wkyfynj5qvbaxyqsovl7tcnhlnwvper4 [82/89]
==> No binary for openfoam-1806-wkyfynj5qvbaxyqsovl7tcnhlnwvper4 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/69/6951aab6405294fe59cec90b0a4e425f5403043191cda02ebaaa890ce1fcc819.tgz
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/53/531146be868dd0cda70c1cf12a22110a38a30fd93b5ada6234be3d6c9256c6cf
==> Applied patch https://develop.openfoam.com/Development/openfoam/commit/8831dfc58b0295d0d301a78341dd6f4599073d45.patch
==> Added file spack-Allwmake
==> Added file README-spack
==> Added directory link OpenFOAM-v1806
==> Ran patch() for openfoam
==> openfoam: Executing phase: 'configure'
==> openfoam: Executing phase: 'build'
==> openfoam: Executing phase: 'install'
==> openfoam: Successfully installed openfoam-1806-wkyfynj5qvbaxyqsovl7tcnhlnwvper4
Stage: 8m 48.26s. Configure: 2.19s. Build: 6h 20m 36.72s. Install: 37m 46.51s. Post-install: 30m 13.91s. Total: 7h 37m 38.36s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/openfoam-1806-wkyfynj5qvbaxyqsovl7tcnhlnwvper4
==> Error: of-catalyst-1806-bvh6ehjtv42n5c3a4hdjdxm5rkafausa: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libxt-1.1.5-n57wqbn27xpcbcmnxjk3k35bi4n4kpxs
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libxrandr-1.5.3-oojotmk7g5r4xelyw6e2eqqadrgn6y2y
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/xrandr-1.5.0-e4wfp5446czz6yw6ljjgzj7jemj32be6