List of Open Source Software which can be built on Fugaku

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Spack will be used to manage open source software packages on Fugaku. Fugaku users can easily use pre-installed packages and built packages based on Spack recipes. The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes. Note that the results in this list do not guarantee that each package will work properly. On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
  • OpenJDK 11
  • Ruby 2.6.5 or later
  • Python2 2.7.15
  • Python3 3.6.8
  • Numpy 1.14.3
  • SciPy 1.0.0
  • Eclipse IDE 2019-09 R Packages
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orthomcl 2.0.9

Compiler Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38
Result Dependency Error

Failed Reason

Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
==> Warning: using "openssl@1.1.1k" which is a deprecated version
[+] /usr (external bzip2-1.0.6-r4iabrte3nd5eemcd5v5coc3kvsnoyzu)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cpio-2.14-zv5t46qws3fezomwukgcgdvknaydcdmw
[+] /usr (external freetype-2.9.1-cauabtwo5dqzdbkssgtqnfqanh6djcyx)
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /usr (external gnutls-3.6.16-zd75auy6lg2wyteuizlxhp6mt6d6jykt)
[+] /usr (external libpng-1.6.34-xtms7s6d3iod6ac4f3fps6a5ksxtwdpa)
[+] /usr (external openssl-1.1.1k-bprmjv6lxavt4jwalf6ucpmia7oubuqp)
[+] /usr (external pcre-8.42-z2f5efp237uulatdncggkwll6eduvzyg)
[+] /usr (external perl-5.26.3-rkgbbov2pluaat3kknhtag5ui3vltkqk)
[+] /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk (external python-3.10.8-zcbuy6dnhwhmsrco46b6ayaywy4nrfcy)
[+] /usr (external xz-5.2.4-l5cq5xund4a2b3ikazvehpmbiao6srbv)
[+] /usr (external curl-7.61.1-qsvgylcys5hkzdnl2pdh4blrprxlsp5m)
[+] /usr (external gettext-0.19.8.1-6jl23wn6jpwquhvqibpwhvia7vxsgrq3)
[+] /usr (external libaio-0.3.112-4pqsozhvswnwsfrkq6swx2efzxyzrhtq)
[+] /usr (external libedit-3.1-ux4kuci6bussthhfjp5hadpzdjflft7e)
[+] /usr (external libevent-2.1.8-sq47i6xgucp7k3b3reph6vmchx5xr2i4)
[+] /usr (external libxml2-2.9.7-psbfksllqwmljlwwnb24enmihejo6ws6)
[+] /usr (external lz4-1.8.3-ldbpdr7ujm6p5vdasnwd2ujsioqi34gf)
[+] /usr (external ncurses-6.1-a6lc7oq2dlgphtibbpp6x72mqgmscros)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zstd-1.5.5-o7dcxyae4kjgruht44yuloa27ddisxfe
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/lmdb-0.9.31-z4qgelxgm6sfvlrskd7xq63zbxxhfnpv
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/msgpack-c-3.1.1-idfkbkpc4zafydxrmqchff3efuknhwwg
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libjpeg-turbo-3.0.0-isdeykvaxqsqvht7e4gy4u4and66oeo7
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libsodium-1.0.18-jmecq4c2pwrirey4q3s7n3pieieh32wn
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libmd-1.0.4-c6kxvz3uxe2gfan53cddxzubiobsk6j7
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/lzo-2.10-rtnjn5365bl6kfim5eejzfdyomj55ndl
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/jemalloc-5.3.0-wrslyfjrjjqwxsh5dnrk5qjr325a3h7n
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/mcl-14-137-zqgbzvzy5h5efqcbas3zyvlqkftdonag
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/krb5-1.20.1-pfm5v36cpu3abc64n3swyxhjvvtjion3
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-fpdkui6yha674j4vqmienjpxohh6fwrs
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libbsd-0.11.7-ovlcn2spf2nziz5itskfcmtdbqscyqii
==> Installing blast-plus-2.14.1-a7zweykay3fxud3io3embslfoz2byhpv [34/37]
==> No binary for blast-plus-2.14.1-a7zweykay3fxud3io3embslfoz2byhpv found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/71/712c2dbdf0fb13cc1c2d4f4ef5dd1ce4b06c3b57e96dfea8f23e6e99f5b1650e.tar.gz
==> No patches needed for blast-plus
==> blast-plus: Executing phase: 'autoreconf'
==> blast-plus: Executing phase: 'configure'
==> Error: ProcessError: Command exited with status 1:
'/vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-blast-plus-2.14.1-a7zweykay3fxud3io3embslfoz2byhpv/spack-src/c++/configure' '--prefix=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/blast-plus-2.14.1-a7zweykay3fxud3io3embslfoz2byhpv' '--with-bin-release' '--without-debug' '--with-mt' '--without-boost' '--with-dll' '--without-static' '--without-static-exe' '--with-jpeg=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libjpeg-turbo-3.0.0-isdeykvaxqsqvht7e4gy4u4and66oeo7' '--with-png=/usr' '--with-freetype=/usr' '--without-hdf5' '--with-z=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3' '--with-bz2=/usr' '--with-lzo=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/lzo-2.10-rtnjn5365bl6kfim5eejzfdyomj55ndl' '--with-gnutls=/usr' '--with-openssl=/usr' '--with-pcre=/usr' '--with-python=/vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk' '--with-perl=/usr'

1 error found in build log:
69 checking whether /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20
240227/spack/lib/spack/env/fj/fcc has an option to discard unneeded
shared libraries... -Wl,--as-needed
70 checking whether /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20
240227/spack/lib/spack/env/fj/fcc has an option to link in whole st
atic archives... -Wl,--whole-archive
71 checking whether _LIBCPP_VERSION is declared... no
72 checking how to enable modern C++ features in /vol0003/rccs-sdt/data
/a01008/spack-all-test/env-20240227/spack/lib/spack/env/fj/case-inse
nsitive/FCC ... -std=gnu++17
73 checking how to enable modern C features in /vol0003/rccs-sdt/data/a
01008/spack-all-test/env-20240227/spack/lib/spack/env/fj/fcc ... -st
d=gnu17 -fgnu89-inline
74 checking for dpkg-architecture... no
>> 75 configure: error: Unable to find static libstdc++ requested by --wit
h-bin-release.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-blast-plus-2.14.1-a7zweykay3fxud3io3embslfoz2byhpv/spack-build-out.txt

==> Warning: Skipping build of orthomcl-2.0.9-untizhgudcqq426ankuf7nfsl2ldz4fy since blast-plus-2.14.1-a7zweykay3fxud3io3embslfoz2byhpv failed
==> Error: orthomcl-2.0.9-untizhgudcqq426ankuf7nfsl2ldz4fy: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libzmq-4.3.5-crhgyeg23wbtzbip5or4cbt7usnmq32m
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/mariadb-10.8.2-a5p6yke53avhrz3oi3wkli62tj4wz4gp


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