List of Open Source Software which can be built on Fugaku
 |
Spack will be used to manage open source software packages on Fugaku.
Fugaku users can easily use pre-installed packages and built packages based on Spack recipes.
The following list shows the results of building/compiling packages for aarch64 according to the Spack recipes.
Note that the results in this list do not guarantee that each package will work properly.
On the other hand, Fujitsu will provide the following packages compiled with Fujitsu compiler on Fugaku as "external" packages, of which Spack can be aware.
|
pindel 0.2.5b8
| Compiler | Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38 |
|---|---|
| Result | Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
fted_vector.cpp -o shifted_vector.o
849 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/li
b/spack/env/fj/case-insensitive/FCC -Wall -g -c -O3 -fopenmp rea
d_buffer.cpp -o read_buffer.o
850 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/li
b/spack/env/fj/case-insensitive/FCC -Wall -g -c -O3 -fopenmp lin
e_reader.cpp -o line_reader.o
851 2 warnings and 2 errors generated.
>> 852 make: *** [Makefile:47: pindel.o] Error 1
853 make: *** Waiting for unfinished jobs....
>> 854 bddata.cpp:117:73: error: call to 'abs' is ambiguous
855 if (firstChrName == secondChrName && secondChrName !=
"" && abs(firstPos - secondPos) < 500)
856
^~~
857 /usr/include/stdlib.h:837:12: note: candidate function
858 extern int abs (int __x) __THROW __attribute__ ((__const__)) __wur
;
859 ^
860 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:56:3: note: candidate function
...
872 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:78:3: note: candidate function
873 abs(long double __x)
874 ^
875 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:84:3: note: candidate function
876 abs(__GLIBCXX_TYPE_INT_N_0 __x) { return __x >= 0 ? __x : -__x;
}
877 ^
>> 878 bddata.cpp:165:6: error: call to 'abs' is ambiguous
879 if (abs(first.PosA - first.PosA1) > distance) return false
;
880 ^~~
881 /usr/include/stdlib.h:837:12: note: candidate function
882 extern int abs (int __x) __THROW __attribute__ ((__const__)) __wur
;
883 ^
884 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:56:3: note: candidate function
...
896 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:78:3: note: candidate function
897 abs(long double __x)
898 ^
899 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:84:3: note: candidate function
900 abs(__GLIBCXX_TYPE_INT_N_0 __x) { return __x >= 0 ? __x : -__x;
}
901 ^
>> 902 bddata.cpp:166:6: error: call to 'abs' is ambiguous
903 if (abs(first.PosB - first.PosB1) > distance) return false
;
904 ^~~
905 /usr/include/stdlib.h:837:12: note: candidate function
906 extern int abs (int __x) __THROW __attribute__ ((__const__)) __wur
;
907 ^
908 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:56:3: note: candidate function
...
920 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:78:3: note: candidate function
921 abs(long double __x)
922 ^
923 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:84:3: note: candidate function
924 abs(__GLIBCXX_TYPE_INT_N_0 __x) { return __x >= 0 ? __x : -__x;
}
925 ^
>> 926 bddata.cpp:167:6: error: call to 'abs' is ambiguous
927 if (abs(second.PosA - second.PosA1) > distance) return fal
se;
928 ^~~
929 /usr/include/stdlib.h:837:12: note: candidate function
930 extern int abs (int __x) __THROW __attribute__ ((__const__)) __wur
;
931 ^
932 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:56:3: note: candidate function
...
944 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:78:3: note: candidate function
945 abs(long double __x)
946 ^
947 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:84:3: note: candidate function
948 abs(__GLIBCXX_TYPE_INT_N_0 __x) { return __x >= 0 ? __x : -__x;
}
949 ^
>> 950 bddata.cpp:168:6: error: call to 'abs' is ambiguous
951 if (abs(second.PosB - second.PosB1) > distance) return fal
se;
952 ^~~
953 /usr/include/stdlib.h:837:12: note: candidate function
954 extern int abs (int __x) __THROW __attribute__ ((__const__)) __wur
;
955 ^
956 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:56:3: note: candidate function
...
968 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:78:3: note: candidate function
969 abs(long double __x)
970 ^
971 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:84:3: note: candidate function
972 abs(__GLIBCXX_TYPE_INT_N_0 __x) { return __x >= 0 ? __x : -__x;
}
973 ^
>> 974 bddata.cpp:380:63: error: call to 'abs' is ambiguous
975 if (Reads_RP[first].ChrNameA == Reads_RP[first].Ch
rNameB && abs(Reads_RP[first].PosA - Reads_RP[first].PosB) < 500)
Reads_RP[first].Visited = true;
976
^~~
977 /usr/include/stdlib.h:837:12: note: candidate function
978 extern int abs (int __x) __THROW __attribute__ ((__const__)) __wur
;
979 ^
980 /usr/lib/gcc/aarch64-redhat-linux/8/../../../../include/c++/8/bits
/std_abs.h:56:3: note: candidate function
...
997 ^
998 In file included from read_buffer.cpp:8:
999 ./read_buffer.h:25:30: warning: private field 'm_OneEndMappedReads
' is not used [-Wunused-private-field]
1000 std::vector<SPLIT_READ> &m_OneEndMappedReads;
1001 ^
1002 6 errors generated.
>> 1003 make: *** [Makefile:47: bddata.o] Error 1
1004 1 warning generated.
1005 8 warnings generated.
See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-pindel-0.2.5b8-m62qcfpcodwzti7hunctulmlfwl63xdv/spack-build-out.txt
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