Failed Reason

Failed to install dependency package :
------------------------------------------------
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
==> Warning: using "openssl@1.1.1k" which is a deprecated version
[+] /usr (external autoconf-2.69-titfazaulrbnqxmahzxzof53lmsnabip)
[+] /usr (external automake-1.16.1-fryterkxezzfuo7itm4kijqfnazo5uk4)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-slvpnrmjs7gntud6rtuym5tdverbvnun
[+] /usr (external gmake-4.2.1-eszqmok6vi6wxcmklx6bqloeidbh25kb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gnuconfig-2022-09-17-w33oejhx46ex2iql4orzjqdmt2kdqdb2
[+] /usr (external libtool-2.4.6-c63win5txkc7eap5ppbbjjoaqyj5i6wx)
[+] /usr (external m4-1.4.18-craoyd3hmfdcanz7zxglna5yxcvdtoem)
[+] /opt/FJSVxtclanga/tcsds-ssl2-latest (external fujitsu-ssl2-head-7eif42hdxt2tixz7cufiyhj62kz3jntb)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/ninja-1.11.1-hkoahomauz36ql3b7gyr3bbjctk3swkj
[+] /usr (external pkgconf-1.4.2-mmjuloqcob6vnd6bylwgum67waaa3kht)
[+] /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk (external python-3.10.8-zcbuy6dnhwhmsrco46b6ayaywy4nrfcy)
[+] /usr (external bzip2-1.0.6-r4iabrte3nd5eemcd5v5coc3kvsnoyzu)
[+] /usr (external curl-7.61.1-qsvgylcys5hkzdnl2pdh4blrprxlsp5m)
[+] /usr (external xz-5.2.4-l5cq5xund4a2b3ikazvehpmbiao6srbv)
[+] /usr (external ncurses-6.1-a6lc7oq2dlgphtibbpp6x72mqgmscros)
[+] /usr (external perl-5.26.3-rkgbbov2pluaat3kknhtag5ui3vltkqk)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/gzip-1.12-u55zm2bfq2mebh4chnmivqkqmbbdw2zi
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-setuptools-68.0.0-umhokgnekqyzlgjhl6pifea67uvzwnge
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-wheel-0.41.2-uecnqi7ns7hm2wehm3fwrq4fyygklprs
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pip-23.1.2-e5mqkkojghz4zpl6zboxzql3mko55ccd
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/libdeflate-1.18-wdq7uvwnauvzqysy24aknbmredmsjh5r
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-snowballstemmer-2.2.0-tqm667impzruofi3uqkalu6uxbogtyt3
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pygments-2.16.1-brrayglatfj64mhyd7fbumkq6jik7qw4
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-imagesize-1.4.1-p7lxrlrm77k57rz2joitbh7hsdrtajni
==> Installing py-markupsafe-2.0.1-637nno5oxjjj33hirvlnwemfuhgkskvl [26/46]
==> No binary for py-markupsafe-2.0.1-637nno5oxjjj33hirvlnwemfuhgkskvl found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/59/594c67807fb16238b30c44bdf74f36c02cdf22d1c8cda91ef8a0ed8dabf5620a.tar.gz
==> No patches needed for py-markupsafe
==> py-markupsafe: Executing phase: 'install'
==> py-markupsafe: Successfully installed py-markupsafe-2.0.1-637nno5oxjjj33hirvlnwemfuhgkskvl
Stage: 2.25s. Install: 12.94s. Post-install: 6.69s. Total: 22.44s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-markupsafe-2.0.1-637nno5oxjjj33hirvlnwemfuhgkskvl
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-cython-0.29.36-samzl4hunnfirzddufylooccm35ucxki
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-babel-2.12.1-a2vi7tzxk6x5t2lzm5yidiil22jp7s62
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-alabaster-0.7.13-fbd63pcwdbspkconc2mdjscspczj36jy
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-packaging-23.1-yxzztmamwtgtkjqep4mb57ht6ztozn7a
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pytz-2023.3-7g3i5s3pnpmdspxhhfo2mestraecwsh6
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-docutils-0.16-vvrpxut2ki4b767x66as4czlt5wvcufx
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-six-1.16.0-ztq6x5ahyilyk723qkmrff772hjcllpa
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-tomli-2.0.1-jsxdxnw7umod72hqs44hg5bn5n6dc7ri
==> Installing htslib-1.17-y6gwptav3s7cgh3q5ui7f65xzrljj2sy [35/46]
==> No binary for htslib-1.17-y6gwptav3s7cgh3q5ui7f65xzrljj2sy found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/76/763779288c40f07646ec7ad98b96c378c739171d162ad98398868783b721839f.tar.bz2
==> No patches needed for htslib
==> htslib: Executing phase: 'autoreconf'
==> htslib: Executing phase: 'configure'
==> htslib: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j16' 'V=1'

1 error found in build log:
85 ==> [2024-04-05-07:58:08.394104] Find (recursive): /data/rccs-sdt/a0
1008/tmpdir/spack-stage/spack-stage-htslib-1.17-y6gwptav3s7cgh3q5ui7
f65xzrljj2sy/spack-src ['libtool']
86 ==> [2024-04-05-07:58:08.473291] Find complete: /data/rccs-sdt/a0100
8/tmpdir/spack-stage/spack-stage-htslib-1.17-y6gwptav3s7cgh3q5ui7f65
xzrljj2sy/spack-src ['libtool']
87 ==> htslib: Executing phase: 'build'
88 ==> [2024-04-05-07:58:08.519545] 'make' '-j16' 'V=1'
89 make: Makefile: Too many levels of symbolic links
90 make: stat: Makefile: Too many levels of symbolic links
>> 91 make: *** No rule to make target 'Makefile'. Stop.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-htslib-1.17-y6gwptav3s7cgh3q5ui7f65xzrljj2sy/spack-build-out.txt

==> Warning: Skipping build of samtools-1.17-uzk2elkrkv44iuaypyqzwm66xp6nbtts since htslib-1.17-y6gwptav3s7cgh3q5ui7f65xzrljj2sy failed
==> Warning: Skipping build of portcullis-1.2.3-fhtqkvtjjpe5zlemqcce7avyx232kun4 since samtools-1.17-uzk2elkrkv44iuaypyqzwm66xp6nbtts failed
==> Installing py-jinja2-2.11.3-2k6535t3v34izyvkyru6ubtd364kdt56 [36/46]
==> No binary for py-jinja2-2.11.3-2k6535t3v34izyvkyru6ubtd364kdt56 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/a6/a6d58433de0ae800347cab1fa3043cebbabe8baa9d29e668f1c768cb87a333c6.tar.gz
==> No patches needed for py-jinja2
==> py-jinja2: Executing phase: 'install'
==> py-jinja2: Successfully installed py-jinja2-2.11.3-2k6535t3v34izyvkyru6ubtd364kdt56
Stage: 4.05s. Install: 13.27s. Post-install: 1.25s. Total: 19.21s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-jinja2-2.11.3-2k6535t3v34izyvkyru6ubtd364kdt56
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pyproject-metadata-0.7.1-fs3vme4uqputh5py6ykygic6maqw3tlh
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-python-dateutil-2.8.2-aj4jw5b3skcdcl37umot4ovqikyfjwjq
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-versioneer-0.29-7ely3ypn6gsl4b6q4yzfm6fzca3ecmfo
==> Installing py-sphinx-1.4.5-hykou43ehzy5jtdicp2hrwevdxaf6rc3 [40/46]
==> No binary for py-sphinx-1.4.5-hykou43ehzy5jtdicp2hrwevdxaf6rc3 found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/c5/c5df65d97a58365cbf4ea10212186a9a45d89c61ed2c071de6090cdf9ddb4028.tar.gz
==> No patches needed for py-sphinx
==> py-sphinx: Executing phase: 'install'
==> py-sphinx: Successfully installed py-sphinx-1.4.5-hykou43ehzy5jtdicp2hrwevdxaf6rc3
Stage: 25.29s. Install: 1m 12.31s. Post-install: 12.29s. Total: 1m 51.78s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-sphinx-1.4.5-hykou43ehzy5jtdicp2hrwevdxaf6rc3
==> Installing py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw [41/46]
==> No binary for py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw found: installing from source
==> Using cached archive: /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/cache/_source-cache/archive/c8/c8c6c72d4a9f831f328efb1312642a1cafafaa88981d9ab76368d50d07d93cbe.tar.gz
==> Applied patch /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/var/spack/repos/builtin/packages/py-numpy/check_executables.patch
==> py-numpy: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'/vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/bin/python3.10' '-m' 'pip' '-vvv' '--no-input' '--no-cache-dir' '--disable-pip-version-check' 'install' '--no-deps' '--ignore-installed' '--no-build-isolation' '--no-warn-script-location' '--no-index' '--prefix=/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw' '--config-settings=builddir=build' '--config-settings=compile-args=-j16' '--config-settings=setup-args=-Dblas=fjlapackexsve' '--config-settings=setup-args=-Dlapack=fjlapackexsve' '.'

2 errors found in build log:
64
65 Library m found: YES
66 Found CMake: /usr/bin/cmake (3.20.2)
67 WARNING: CMake Toolchain: Failed to determine CMake compilers stat
e
68 Run-time dependency fjlapackexsve found: NO (tried pkgconfig and c
make)
69
>> 70 ../numpy/meson.build:169:4: ERROR: Problem encountered: No BLAS libr
ary detected! Install one, or use the `allow-noblas` build option (n
ote, this may be up to 100x slower for some linear algebra operation
s).
71
72 A full log can be found at /vol0003/rccs-sdt/data/a01008/tmpdir/sp
ack-stage/spack-stage-py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7
yw/spack-src/build/meson-logs/meson-log.txt
73 error: subprocess-exited-with-error
74
75 × Preparing metadata (pyproject.toml) did not run successfully.
76 │ exit code: 1
77 ╰─> See above for output.
78
79 note: This error originates from a subprocess, and is likely not a
problem with pip.
80 full command: /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-
a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk/bin/py
thon3.10 /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/s
pack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pip-23.1.2-e5mqkkojghz
4zpl6zboxzql3mko55ccd/lib/python3.10/site-packages/pip/_vendor/pypro
ject_hooks/_in_process/_in_process.py prepare_metadata_for_build_whe
el /data/rccs-sdt/a01008/tmpdir/tmp16j041dr
81 cwd: /vol0003/rccs-sdt/data/a01008/tmpdir/spack-stage/spack-stage-
py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw/spack-src
82 Preparing metadata (pyproject.toml): finished with status 'error'
>> 83 error: metadata-generation-failed
84
85 × Encountered error while generating package metadata.
86 ╰─> See above for output.
87
88 note: This is an issue with the package mentioned above, not pip.
89 hint: See above for details.

See build log for details:
/data/rccs-sdt/a01008/tmpdir/spack-stage/spack-stage-py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw/spack-build-out.txt

==> Warning: Skipping build of py-pandas-1.5.3-ktebclieg6ttamachbavm22wrxiqzijw since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of py-bottleneck-1.3.7-lsiwlfri5p3ak2fli6cew25t5lovm2af since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Warning: Skipping build of py-numexpr-2.8.4-crtnbjyjucdyh4hottaagjcykbcssfha since py-numpy-1.26.1-lfjg3fewnwt3u4cqwndtt7mluq3bz7yw failed
==> Error: portcullis-1.2.3-fhtqkvtjjpe5zlemqcce7avyx232kun4: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).