py-amici 0.16.0
Compiler |
Fujitsu Compiler Fujitsu C/C++ Compiler 4.10.0 tcsds-1.2.38 |
Result |
Dependency Error |
Failed Reason
Failed to install dependency package :
------------------------------------------------
==> Warning: config:terminal_title has been replaced by install_status and is ignored
==> Warning: Failed to initialize repository: '$spack/var/spack/repos/local'.
No repo.yaml found in '$spack/var/spack/repos/local'
To remove the bad repository, run this command:
spack repo rm $spack/var/spack/repos/local
==> Warning: using "openssl@1.1.1k" which is a deprecated version
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/boost-1.83.0-slvpnrmjs7gntud6rtuym5tdverbvnun
[+] /opt/FJSVxtclanga/tcsds-ssl2-latest (external fujitsu-ssl2-head-7eif42hdxt2tixz7cufiyhj62kz3jntb)
[+] /opt/FJSVxtclanga/tcsds-mpi-latest (external fujitsu-mpi-head-3njd5uwuazr4j2no6fqh4cpjmezknh3z)
[+] /usr (external pkgconf-1.4.2-mmjuloqcob6vnd6bylwgum67waaa3kht)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/zlib-ng-2.1.4-m4nsqgrityww4eqljits3svzi4wynus3
[+] /vol0004/apps/oss/spack-v0.19/opt/spack/linux-rhel8-a64fx/fj-4.8.1/python-3.10.8-7q66snjvhvy7im57hncbgpirmddrb5sk (external python-3.10.8-zcbuy6dnhwhmsrco46b6ayaywy4nrfcy)
[+] /usr (external curl-7.61.1-qsvgylcys5hkzdnl2pdh4blrprxlsp5m)
[+] /usr (external ncurses-6.1-a6lc7oq2dlgphtibbpp6x72mqgmscros)
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/pcre2-10.42-6kbyqamjjurixzzgishkv3abmew2p6xx
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/hdf5-1.14.3-qxnacxgse3udxh7b6wscu6iz3vsyvu6a
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-wheel-0.41.2-uecnqi7ns7hm2wehm3fwrq4fyygklprs
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-setuptools-68.0.0-umhokgnekqyzlgjhl6pifea67uvzwnge
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/ninja-1.11.1-hkoahomauz36ql3b7gyr3bbjctk3swkj
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pip-23.1.2-e5mqkkojghz4zpl6zboxzql3mko55ccd
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/cmake-3.27.7-ussgjuqkqbxi5dcv7kbp6bugdcjc5ph6
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/swig-4.1.1-krn47misz4rokhqg4vsn7pyz55cu625z
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-mpi4py-3.1.4-miqtuhixgmngjckfcpj7w3frwcrbbfx3
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pytz-2023.3-7g3i5s3pnpmdspxhhfo2mestraecwsh6
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-mpmath-1.2.1-sckjr4qqetqooxt5waqmev52plok3hto
==> Installing py-wurlitzer-3.0.2-irmvh6v7okilz35jj3awf5ahd246owbv [20/37]
==> No binary for py-wurlitzer-3.0.2-irmvh6v7okilz35jj3awf5ahd246owbv found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/36/36051ac530ddb461a86b6227c4b09d95f30a1d1043de2b4a592e97ae8a84fcdf.tar.gz
==> No patches needed for py-wurlitzer
==> py-wurlitzer: Executing phase: 'install'
==> py-wurlitzer: Successfully installed py-wurlitzer-3.0.2-irmvh6v7okilz35jj3awf5ahd246owbv
Stage: 1.66s. Install: 8.62s. Post-install: 0.88s. Total: 11.89s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-wurlitzer-3.0.2-irmvh6v7okilz35jj3awf5ahd246owbv
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pkgconfig-1.5.5-t4ug7ipqfyavf5tpa5ykc5caiyojendw
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-packaging-23.1-yxzztmamwtgtkjqep4mb57ht6ztozn7a
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-six-1.16.0-ztq6x5ahyilyk723qkmrff772hjcllpa
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-tomli-2.0.1-jsxdxnw7umod72hqs44hg5bn5n6dc7ri
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-cython-0.29.36-samzl4hunnfirzddufylooccm35ucxki
==> Installing py-toposort-1.6-6ox5urlygf5lf4ztzkf6anc2765i6vnd [26/37]
==> No binary for py-toposort-1.6-6ox5urlygf5lf4ztzkf6anc2765i6vnd found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/a7/a7428f56ef844f5055bb9e9e44b343983773ae6dce0fe5b101e08e27ffbd50ac.tar.gz
==> No patches needed for py-toposort
==> py-toposort: Executing phase: 'install'
==> py-toposort: Successfully installed py-toposort-1.6-6ox5urlygf5lf4ztzkf6anc2765i6vnd
Stage: 1.77s. Install: 6.92s. Post-install: 0.87s. Total: 10.14s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-toposort-1.6-6ox5urlygf5lf4ztzkf6anc2765i6vnd
==> Installing py-python-libsbml-5.19.7-5oajxwmbvlrfrdbbinoylwx4anlerirl [27/37]
==> No binary for py-python-libsbml-5.19.7-5oajxwmbvlrfrdbbinoylwx4anlerirl found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/44/447b1fde7aceccd11a93dc9f589ffd9319ba854d7b7583f911259a8b0127ab7b.tar.gz
==> No patches needed for py-python-libsbml
==> py-python-libsbml: Executing phase: 'install'
==> py-python-libsbml: Successfully installed py-python-libsbml-5.19.7-5oajxwmbvlrfrdbbinoylwx4anlerirl
Stage: 10m 37.12s. Install: 1h 19m 32.35s. Post-install: 4.72s. Total: 1h 30m 16.59s
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-python-libsbml-5.19.7-5oajxwmbvlrfrdbbinoylwx4anlerirl
==> Error: error parsing database:
[Errno 2] No such file or directory: '/vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/.spack-db/index.json'
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-sympy-1.11.1-x2qj2aqtkwib4q2g5jeu6pmenu3gkpk3
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-pyproject-metadata-0.7.1-fs3vme4uqputh5py6ykygic6maqw3tlh
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-python-dateutil-2.8.2-aj4jw5b3skcdcl37umot4ovqikyfjwjq
[+] /vol0003/rccs-sdt/data/a01008/spack-all-test/env-20240227/spack/opt/spack/linux-rhel8-a64fx/fj-4.10.0/py-versioneer-0.29-7ely3ypn6gsl4b6q4yzfm6fzca3ecmfo
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